Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4294 ATGGTGCTCGAGGCGACTATGATCTGTATTGACAATTCTGAATGGATGCGTAACGGTGATTACACTCCTTCTCGATTTCAAGCCCAATCAGACGCTGTAAGTCTGATTTGCGGTGCTAAAACTCAGTCTAATCCTGAAAATACGGTTGGAGTTCTCACCATGGCGGGGAAGGGTGTTCGAGTTTTGGCTACTCCTACCAGTGATTTGGGCAAAATCTTAGCTTGTATGCATGGTCTAGAAATAGGCGGTGAGATGAACCTTGCTGCTGGCATTCAGGTGGCACAGTTGGCTCTTAAGCATCGGCAGAATAAGAAGCAACAACAAAGGATTATTGTTTTTTCTGGAAGTCCTATCAATCATGAAAAGAAAATGTTGGAGATGATTGGGAGAAAGTTGAAAAAGAATAGTGTTGCACTTGACATTGTCAACTTCGGTGAAGAAGACGAGGGGAAGACAGAGAAGCTGGAAGCACTCCTTGCAGCCGTAAACAATAATGATAGTAGCCACATGGTTCAAGTTCCACCTGGTCCAAATGCTCTTTCGGATGTACTTATAAGTACACCTATATTTACTGGTGACGGAGAAGGTGGAAGTGGTTTTGCAGCTGCTGCTGCAGCAGCATCTGCAGGGGGTGTGTCTGGGTATGATTTTGGTGTGGATCCAAACTTGGACCCTGAATTGGCTCTTGCTCTACGAGTTTCAATGGAAGAGGAGAGAGCAAGGCAGGAAGCAGCTGCGAAAAAGGCTGCAGAGGATGCTTCCAAACAGGAGAAAGGTGGTGATCAGCAAGCTATTTCCCAGGATGCAACGATGACTGAGCGAACCAGTACAGAAGCTGAGACAAATGATATGATGGACGATGAGAATGCTCTACTACAGCAGGCCCTTGCAATGTCAATGGATGATGCTGTAGTTAACCATGATGTAAGAGATGCAGATATGTCTGAAGCTGCTACAGATGATGTTGACTTGGCTCGAGCTCTCCAATTGTCACAAACCCCCGCAAGCCTCGCCGCGGACCCAGTGGGGAGATTGTTGGCAGATCAGTCCTTTGTATCTTCTGTCCTTGCATCGCTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAGGATTTACTGGCTTCCATGCAAAATCAGTCTGAGTCTCACAAGAAGAATGAAGAGGAGCGGCCAAATGAGGAGTCAGATTAA 1191 0.4652 MVLEATMICIDNSEWMRNGDYTPSRFQAQSDAVSLICGAKTQSNPENTVGVLTMAGKGVRVLATPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFSGSPINHEKKMLEMIGRKLKKNSVALDIVNFGEEDEGKTEKLEALLAAVNNNDSSHMVQVPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAASAGGVSGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDASKQEKGGDQQAISQDATMTERTSTEAETNDMMDDENALLQQALAMSMDDAVVNHDVRDADMSEAATDDVDLARALQLSQTPASLAADPVGRLLADQSFVSSVLASLPGVDPNDPSVKDLLASMQNQSESHKKNEEERPNEESD* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4294 396 SUPERFAMILY vWA-like 4 173 IPR036465 -
Tpr4g4294 396 SMART VWA_4 2 175 IPR002035 -
Tpr4g4294 396 MobiDBLite consensus disorder prediction 242 258 - -
Tpr4g4294 396 MobiDBLite consensus disorder prediction 242 285 - -
Tpr4g4294 396 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Tpr4g4294 396 MobiDBLite consensus disorder prediction 259 278 - -
Tpr4g4294 396 MobiDBLite consensus disorder prediction 360 396 - -
Tpr4g4294 396 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Tpr4g4294 396 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Tpr4g4294 396 Coils Coil 232 252 - -
Tpr4g4294 396 MobiDBLite consensus disorder prediction 381 396 - -
Tpr4g4294 396 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 394 - -
Tpr4g4294 396 CDD VWA_26S_proteasome_subunit 1 188 - -
Tpr4g4294 396 Gene3D - 220 305 - -
Tpr4g4294 396 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 394 - -
Tpr4g4294 396 SMART uim 222 241 IPR003903 -
Tpr4g4294 396 SMART uim 287 306 IPR003903 -
Tpr4g4294 396 SMART uim 319 338 IPR003903 -
Tpr4g4294 396 Pfam Ubiquitin interaction motif 287 302 IPR003903 -
Tpr4g4294 396 Pfam Ubiquitin interaction motif 319 332 IPR003903 -
Tpr4g4294 396 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Tpr4g4294 396 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4294 Tpr-Chr4 50096025 50103015 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4294 K03029 - gmx:100814594 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4294 4 50096025 50103015 Tpr4g4294 4 50096025 50103015 ECH
Tpr2g1124 2 13186569 13191830 Tpr4g4294 4 50096025 50103015 PCT