Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4211 ATGTCTTCATTTTTTTCTTCCTTCTCTTCTACCTCATCAGAGACAAACCTAACCACCGCAAAAACAATCCTCTCAACCGCCGCCACCGTAGCCGCCACCGCAGTACTAATCCGTACAGTCGCCAATGAATTTCTCCCAATGGACCTCCGTGAATACGTATTCACCGGAATCCAATCCCTTTACTCTCATTTCTCCTCCGACCTAACAATGGTAATCGAAGAATTCGAAGGTCTCGATAATAACCAAATCTACTCCGCCGCTGAAACCTATCTCGGCACCGTAGTTCCACCTTCAACAAAACGACTCCGTTTAAGCAAATTCGATCACCAACAAAACTTCACTCTCGCAATGGAACATAACCAATCAGTAACAGATTTCTTCAACGGCGTTAAAATCAACTGGATCCTCTTATGCCGCCGCGTCGAGAATTTCAGCAACAACCGCGATCTAACCGCCACGTTAAAATCAGAAATCCGTTCGTTAGAATTAACATTCAATAGAAAACACAAAGCCATGATTCTCAACGATTACATTCCGTTTATTCTCCGAGAATCAAAATCAAAGAAACAAGAATTAAAAGCTTTACGAATCTTCACCGTTGATTATCAGAATCTGTACGGGAATTTGAATGATGCGTGGATGGGGACGACGCTAAATCATCCTTCAACTTTTGACACGCTGGCACTTGACCGTGATTTACGGGAGTTTGTTATAGGTGATTTGGAAAAGTTTGTTATGAGGAAAGAATATTATAGAGAAGTTGGGAAAGCTTGGAAGAGAGGTTATTTATTGTATGGTCCACCTGGAACTGGGAAAAGTAGTTTGATTGCTGCTATGGCTAATTATTTGCATTTTGATATTTATGATTTGGAATTGACTGAGTTGAGTAATAATGCTGAGTTGAGGAGATTGTTGATTGCTATGCCTAATAGGTCTATTGTTGTTGTTGAGGATATTGATTGTACTGTTGAGTTTCAGGATCGAGTTGCGCAATCTAGGTCTTGCAGAAATGATAAACAGGTTACACTATCAGGGTTGCTGAATTTTATTGATGGACTATGGTCAAGTTGTGGAGATGAAAGGATTATAGTGTTCACAACGAACCACAAGGAAAAGCTTGATCCAGCTTTGTTGCGCCCCGGCCGCATGGATGTTCATATTTACATGTCCTATTGTACTCCCTATGGTTTTAGACAGTTAGCTTTCCGTTACCTTGGAATTAAAGAACACACCCTATTTGGAGAGATTGAGGAAACAATTCAGCAAGCGCTGGTAACTCCAGCTGAAGTGGCGGAGCAGCTTCTCAAGGGCAGCGAGACCGATACTACTCTTAAAGATCTATCAAATTTTCTTAGAAAGAAGAAAGAAATTCAGGAACTTGAGGCTAAAAAGAGAGAACAAGAGGAGCAGCAGTTGGTAGATGAACGTGTTAATGAAGAAGAAAATATCAACAACAGATCTGACAAAGTAATTCAACATTTCCCTCCTCAAAATTGTAATAATGGTGGAGCAGTTTAA 1518 0.4065 MSSFFSSFSSTSSETNLTTAKTILSTAATVAATAVLIRTVANEFLPMDLREYVFTGIQSLYSHFSSDLTMVIEEFEGLDNNQIYSAAETYLGTVVPPSTKRLRLSKFDHQQNFTLAMEHNQSVTDFFNGVKINWILLCRRVENFSNNRDLTATLKSEIRSLELTFNRKHKAMILNDYIPFILRESKSKKQELKALRIFTVDYQNLYGNLNDAWMGTTLNHPSTFDTLALDRDLREFVIGDLEKFVMRKEYYREVGKAWKRGYLLYGPPGTGKSSLIAAMANYLHFDIYDLELTELSNNAELRRLLIAMPNRSIVVVEDIDCTVEFQDRVAQSRSCRNDKQVTLSGLLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHIYMSYCTPYGFRQLAFRYLGIKEHTLFGEIEETIQQALVTPAEVAEQLLKGSETDTTLKDLSNFLRKKKEIQELEAKKREQEEQQLVDERVNEEENINNRSDKVIQHFPPQNCNNGGAV* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4211 505 MobiDBLite consensus disorder prediction 462 505 - -
Tpr4g4211 505 ProSitePatterns AAA-protein family signature. 361 379 IPR003960 GO:0005524|GO:0016887
Tpr4g4211 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 434 IPR027417 -
Tpr4g4211 505 MobiDBLite consensus disorder prediction 488 505 - -
Tpr4g4211 505 Gene3D - 388 458 - -
Tpr4g4211 505 Coils Coil 450 482 - -
Tpr4g4211 505 Gene3D - 211 387 IPR027417 -
Tpr4g4211 505 Pfam ATPase family associated with various cellular activities (AAA) 263 390 IPR003959 GO:0005524|GO:0016887
Tpr4g4211 505 PANTHER PROTEIN HYPER-SENSITIVITY-RELATED 4-LIKE 14 485 - -
Tpr4g4211 505 Pfam Domain associated at C-terminal with AAA 45 137 IPR025753 -
Tpr4g4211 505 SMART AAA_5 258 393 IPR003593 -
Tpr4g4211 505 PANTHER BCS1 AAA-TYPE ATPASE 14 485 - -
Tpr4g4211 505 MobiDBLite consensus disorder prediction 462 487 - -
Tpr4g4211 505 CDD AAA 259 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4211 Tpr-Chr4 49232508 49235561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4211 251 400 Miscellaneous Gene Families AT3G02450 32.704 6.39e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4211 - K08900 gmx:100788420 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1030 2 12163112 12167724 Tpr4g4211 4 49232508 49235561 ECH
Tpr4g4211 4 49232508 49235561 Tpr4g4211 4 49232508 49235561 ECH