Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1030 ATGTTTTCTTCACCAAGAGAAATGCCTTCACCATCTTCAATTTTCTCAGCATATGCATCCATGACAGCTTCAATCATGCTACTTCGTTCCATGGCACAAGAACTCATTCCTCAACCAATTCGTGGTTACCTTTTAAACACTTTCCGCTACTTCATAAAACCACGTTCCTCAACACTCACTCTCATCATAGAAGAATCAACAGGAATAGCAAGAAACCAAGTCTATGATGCAGCAGAATCTTATCTCTCAACAAGAGTTACTCCAGAAAACGAAAGACTCAAAATCAGCAAAGTCCCAAAAGAGAAAAAACTCACAATTCGATTAGAAAAAGGCGAAAAATTAACCGATGTTTACCAAGGTGTTAGTCTCAACTGGAGATTCATTTGTGCTGAAACAGAGAAAAACAGTGCAAATGATATGCAGAACAGTAACAACAGTATCTCAGTTAGATCAGAAAAAAAATATTTTGAACTTAGTATTCACAAAAAGTTTAAGGAAATTGTTTTAGAATCTTATCTTCCTTTCATTCTTGATAAAGCTAAAGAGATGAAAGAAGAAGAAAGAGTGTTGAAAATGCATACTTTAAACACTACTTATTGTTACAGTAGTGTGAAATGGGATTCTATAAATCTTGAACATCCTTCAACATTTGAAACACTTGCAATGGAACCAGAATTGAAGAATGAAATTATACAAGATTTGAATATGTTTGTGAAGAGAAGAGAGTTTTATAAGAAAGTTGGAAGAGCTTGGAAACGTGGTTATTTGCTATATGGTCCTCCTGGAACTGGAAAATCTAGTTTGATTGCTGCTATGGCTAATTATTTGAAGTTTGATATATTTGATCTTCAACTTGGGAATATTGCTAGAGATTCTGATCTTAGAAAGTTGCTTCTTGCTACTGCTAATAGATCTATTTTGGTTATTGAAGATATTGATTGCAGTGTTGATATTCCTGAACGTGGTGGTAGGCATGGAGATGGACAGAAACAGCAGACTGATATACAGTTGACATTATCTGGATTACTAAACTTCATAGATGGATTATGGTCAAGTTGTGGAGATGAAAGAATCATCATATTTACAACAAACCACAAAGAAAGATTAGATCCAGCTCTTTTAAGGCCAGGAAGAATGGACATGCACATTCACATGTCCTATTGTTCTTATGAAGGTTTCAAAGTTTTGGCCTCAAATTACTTGGAAATTTCTCATGATACCCCCTTATTTGGAGAGATTGAAGGACTAATTGAAGACATACAAATAACACCGGCACAAGTGGCGGAAGAATTGATGAAGAGCGAAGACGCCGAGGCGACACTTGAAGGATTTGTGAAGTTACTTAAAAGGAAGAAGATGGAAGGTGATGTGTGTGAGAACAATAATAAAATAGAACAAGAGAAGCAATCTAAAAAACGTAAGGTTAGTTGCAAGCAAAAAAGAGGAGGTGCGAATAGCAAAAGCAATGTTGGTGTTACTCTAAGAAGGACAAGAGGAATTAAATAA 1506 0.3552 MFSSPREMPSPSSIFSAYASMTASIMLLRSMAQELIPQPIRGYLLNTFRYFIKPRSSTLTLIIEESTGIARNQVYDAAESYLSTRVTPENERLKISKVPKEKKLTIRLEKGEKLTDVYQGVSLNWRFICAETEKNSANDMQNSNNSISVRSEKKYFELSIHKKFKEIVLESYLPFILDKAKEMKEEERVLKMHTLNTTYCYSSVKWDSINLEHPSTFETLAMEPELKNEIIQDLNMFVKRREFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIARDSDLRKLLLATANRSILVIEDIDCSVDIPERGGRHGDGQKQQTDIQLTLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHIHMSYCSYEGFKVLASNYLEISHDTPLFGEIEGLIEDIQITPAQVAEELMKSEDAEATLEGFVKLLKRKKMEGDVCENNNKIEQEKQSKKRKVSCKQKRGGANSKSNVGVTLRRTRGIK* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1030 501 Pfam Domain associated at C-terminal with AAA 36 128 IPR025753 -
Tpr2g1030 501 Gene3D - 384 455 - -
Tpr2g1030 501 Gene3D - 204 383 IPR027417 -
Tpr2g1030 501 PANTHER BNAA10G17020D PROTEIN 7 468 - -
Tpr2g1030 501 Coils Coil 461 481 - -
Tpr2g1030 501 Pfam ATPase family associated with various cellular activities (AAA) 256 386 IPR003959 GO:0005524|GO:0016887
Tpr2g1030 501 PANTHER BCS1 AAA-TYPE ATPASE 7 468 - -
Tpr2g1030 501 MobiDBLite consensus disorder prediction 463 501 - -
Tpr2g1030 501 CDD AAA 252 387 - -
Tpr2g1030 501 ProSitePatterns AAA-protein family signature. 357 375 IPR003960 GO:0005524|GO:0016887
Tpr2g1030 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 436 IPR027417 -
Tpr2g1030 501 SMART AAA_5 251 389 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1030 Tpr-Chr2 12163112 12167724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1030 244 441 Miscellaneous Gene Families AT3G02450 31.731 4.98e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1030 - - gmx:100789621 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1030 2 12163112 12167724 Tpr4g4211 4 49232508 49235561 ECH
Tpr2g1030 2 12163112 12167724 Tpr2g1030 2 12163112 12167724 ECH