Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4142 ATGAAAATCGATCAAGGTGACAAAGAAAACGAAACAACCAAGTTGAATAAATATGCTTTTGCTTGTGCCATAGTGGCTTCAATGGTATCCATCGTTTCTGGTTATGATACTGGTGTTATGAGTGGAGCAATGGAGTTCATAAAGGAAGACATGGGAATCAGCGACACACAACAAGAGGTTTTGGCAGGAATTTTAAATATTTGTGCATTAGTAGGATCCTTAACAGCAGGAAGAACATCTGATTACATTGGTCGTCGCTACACAATCTTGTTATCCGCCTTACTCTTCATTCTCGGTGCAGTTTTAATGGGATATGGTCCAAACTATGCAATTTTAATGGTTGGAAGGTGTGTTTGTGGTGTTGGCGTTGGTTTTGCTCTAATGATAGCACCTGTTTATTCGGCAGAAATTTCTTCTGCGTCATCAAGAGGTTTTTTAACCTCTTTACCTGAGGTTTGTATTGGTATTGGAATCTTTTTGGGTTATATTTCAAATTATTTTTTGGGGAAATATTTGAGTTTGAAACTTGGATGGAGATTAATGCTTGGTATTGCCGCTTTTCCTTCACTTGTATTAGCTTTTGGTATTTTAATGATGCCAGAGTCACCAAGATGGTTGGTTATGCAAGGTCAATTAGGGAAAGCCAAAAAAGTTCTATTGCAAGTTTCAAATACAACACAAGAAGCTGAACTCCGCTTCAAGGATATAAAACTTGCAGCTGGTTTAGATGAAAATTGCAATGACGATATTGTGAAATTACCTGAGAAGTTTCACCAAGGTGAAGATGTTTGGAAAGAGCTGATTTTAAGACCAACACCTACTGTACGTTGGATTTTATTTGCTGCAATTGGAATTCATTTTTTCGAACATGCAACTGGAATCGAAGCTGTTATGTTATATAGTCCAAAAATTTTCAAAAAAGCTGGCGTTACAAATAAAGAAAAGCGTTTGCTTGCAACTATCGGAGTGGGATTAACAAAGATATTTTTCCTTTTAATTGCTTTGTTTTTGCTTGATAAAGTTGGTAGAAGACGGTTATTGCAAATTAGTGTCGGAGGAATGATTATCGGGCTTACAATATTAGGGTTTAGTTTGACTATGGTGGATCAATCCAATGAAAAGGTCCCGTGGGCCTTGACGCTTAGTATTGTGGCGACGTATGCCTATGTTGCTTTCTTTAATCTCGGGCTTGGGCCTGTTACTTGGGTTTATAGCTCGGAAATATTTCCTTTGAAGTTGAGAGCGCAAGGAGCTAGTATGGGAGTTGCTGTCAATAGAACTATGAACGGCATTGTCTCCATGACTTTTATTTCCATTTATAAAGCAATCACAATAGGTGGAACTTTTTTCATGTTTGCTTCTATATCTGTAATAGCTTGGATTTTTTTCTATTTTTTCCTTCCTGAAACTAAAGGTAAGGCCTTGGAGGAGATGGAGATGCTTTTTACCAAAAAATCAAGTGGTAAAAATGTAGAAATGAAAACTGATCCAATACATAATGTCTAA 1506 0.3705 MKIDQGDKENETTKLNKYAFACAIVASMVSIVSGYDTGVMSGAMEFIKEDMGISDTQQEVLAGILNICALVGSLTAGRTSDYIGRRYTILLSALLFILGAVLMGYGPNYAILMVGRCVCGVGVGFALMIAPVYSAEISSASSRGFLTSLPEVCIGIGIFLGYISNYFLGKYLSLKLGWRLMLGIAAFPSLVLAFGILMMPESPRWLVMQGQLGKAKKVLLQVSNTTQEAELRFKDIKLAAGLDENCNDDIVKLPEKFHQGEDVWKELILRPTPTVRWILFAAIGIHFFEHATGIEAVMLYSPKIFKKAGVTNKEKRLLATIGVGLTKIFFLLIALFLLDKVGRRRLLQISVGGMIIGLTILGFSLTMVDQSNEKVPWALTLSIVATYAYVAFFNLGLGPVTWVYSSEIFPLKLRAQGASMGVAVNRTMNGIVSMTFISIYKAITIGGTFFMFASISVIAWIFFYFFLPETKGKALEEMEMLFTKKSSGKNVEMKTDPIHNV* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4142 501 ProSitePatterns Sugar transport proteins signature 2. 118 143 IPR005829 GO:0016021|GO:0022857|GO:0055085
Tpr4g4142 501 Pfam Sugar (and other) transporter 22 482 IPR005828 GO:0016021|GO:0022857|GO:0055085
Tpr4g4142 501 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 10 492 IPR045262 GO:0015144
Tpr4g4142 501 Gene3D MFS general substrate transporter like domains 11 486 IPR036259 -
Tpr4g4142 501 TIGRFAM SP: MFS transporter, sugar porter (SP) family 14 478 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tpr4g4142 501 ProSitePatterns Sugar transport proteins signature 1. 76 93 IPR005829 GO:0016021|GO:0022857|GO:0055085
Tpr4g4142 501 ProSiteProfiles Major facilitator superfamily (MFS) profile. 22 471 IPR020846 GO:0022857
Tpr4g4142 501 PANTHER POLYOL TRANSPORTER 3-RELATED 10 492 - -
Tpr4g4142 501 SUPERFAMILY MFS general substrate transporter 6 479 IPR036259 -
Tpr4g4142 501 ProSitePatterns Sugar transport proteins signature 1. 334 350 IPR005829 GO:0016021|GO:0022857|GO:0055085
Tpr4g4142 501 PRINTS Sugar transporter signature 30 40 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tpr4g4142 501 PRINTS Sugar transporter signature 113 132 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tpr4g4142 501 PRINTS Sugar transporter signature 289 299 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tpr4g4142 501 PRINTS Sugar transporter signature 383 404 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tpr4g4142 501 PRINTS Sugar transporter signature 406 418 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4142 Tpr-Chr4 48440422 48442871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4142 4 490 Organic Solute Cotransporters AT4G36670 65.714 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4142 - - var:108328789 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0960 2 11568452 11571564 Tpr4g4142 4 48440422 48442871 ECH
Tpr4g4142 4 48440422 48442871 Tpr4g4142 4 48440422 48442871 ECH