Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3869 ATGGCTGTTCAAGCTCAATATCCATCCAATGTCCTCCTTCTAAACAACAATAACAGAAATGGACAAGAAGGACATGATGAGTACTCTTCCTTACAACCACAGCCACCAGGAGGAGGAGGATCATTAGGACTATCACTTCTTGATCATCCCCACAATATCCTATGCAACAACACAAGTACTAATTCTTCTCGCAAGAGAGGAAGAGAAACAACAACAGGAGGAACAGGAACAACAGAAAACAACGTTATTAATCATCAATATCTCTCTTTACAACAACAACAACAACCTCAACCTTCACAAATTATTCATCTTTCTCAACTTCATAATCATCATCAACAACAACAACAACAACAAAATGTCGTCTCCACTGGCCTTCGTTTATCATTTGATGATCATCATCAACAACAACAAAGATTACAATTACAACTTCATCAACACCAACAATCTCAACAACAACAACAACAAGATTGTCACTCCTCTACTTTCTTGTCTCTATATTCACAAGGACTCATTTCTCAAATCAAACAACAAAGTCATGAATTAGACCAATTCATTCAAGCCCAGGGAGAGAATCTGCGGCGGACATTGGCGGAGAAGAGGCAGAGACATTACAGGGAGCTACTAAACGCGGCGGAGGAAGCGGTGGCGCAACGACTCAGAGAAAAAGAAGCAGAATTCACAAAAGCCAGGCGCAAAAACGCAGAGTTAGAAGCGCGTGCAGCTCAATTAACCATGGAAGCCCAATTATGGCAGGCAAAAGCCCGGGCCCAAGAAGCCACGGCAGCATCTCTTCAAGCCCAGCTACAGCAGACAATAATGTGTCAAACCGGCGAAGAAGCCGGCGGAGGCGGTGTTTCATGCGCCGTGGAAGGACAGGCTGAGGATGCCGAATCGGCATATATTGATCCGGATAGAGTGGTTGTTGTTACGGAGGCGCGTGGGAAATGTAGAGGGTGTGAGAAGCGCGTGGCGTCGGTGGTTGTTTTGCCTTGTCGGCACTTATGCATATGTACAGAATGCGATGCGCATTTCAGAGCATGCCCTGTTTGCTTTACTCTCAAGAATTCAACCGTTGAGGTCTTTCTCTCTTAG 1092 0.4487 MAVQAQYPSNVLLLNNNNRNGQEGHDEYSSLQPQPPGGGGSLGLSLLDHPHNILCNNTSTNSSRKRGRETTTGGTGTTENNVINHQYLSLQQQQQPQPSQIIHLSQLHNHHQQQQQQQNVVSTGLRLSFDDHHQQQQRLQLQLHQHQQSQQQQQQDCHSSTFLSLYSQGLISQIKQQSHELDQFIQAQGENLRRTLAEKRQRHYRELLNAAEEAVAQRLREKEAEFTKARRKNAELEARAAQLTMEAQLWQAKARAQEATAASLQAQLQQTIMCQTGEEAGGGGVSCAVEGQAEDAESAYIDPDRVVVVTEARGKCRGCEKRVASVVVLPCRHLCICTECDAHFRACPVCFTLKNSTVEVFLS* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3869 363 Pfam Zinc finger, C3HC4 type (RING finger) 314 350 - -
Tpr4g3869 363 PIRSF SBP1_RNase_bind 1 363 IPR017066 -
Tpr4g3869 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 363 IPR013083 -
Tpr4g3869 363 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 362 - -
Tpr4g3869 363 Coils Coil 205 253 - -
Tpr4g3869 363 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 362 IPR017066 -
Tpr4g3869 363 MobiDBLite consensus disorder prediction 56 79 - -
Tpr4g3869 363 ProSiteProfiles Zinc finger RING-type profile. 316 350 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3869 Tpr-Chr4 44879357 44881246 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3869 K19042 - gmx:100788924 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5579 2 64535297 64537234 Tpr4g3869 4 44879357 44881246 PCT