Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5579 ATGGCTGTTCAAGCTCAATACCCATCCAATGTACATGAATATTCATTACAACCACAACCTGATCAATCCAATATCATCTTATTCAACACTCCAGGTACTAATAATTCTCGAAAAAGAGGAAGAGAAACAGGGGTTATACAATCTTCTCACAACATTATGAATCCTTTCTCTTTACAATCTCACTCTCCTCATCTCATAGACCTCACTCAACTCCATAACCAACAACAACATCATCAACAACATCAAAACATTGTCTCAACCGGTTTAGGTTTATCCTTTGGCGATCAACAACAACAACAACAAAGACTACAATTTCAACAACAACAACAACAAAATGGGTTTCACTCATCTCAATTTCTATCTCTATTATCTCATGGCTTATCTTCACAAATCAAGCAACAAAAAGATGAAATAGACCAATTCCTTCAAGCCCAGGGAGAAGAGCTGCAACGGACATTAGAGGAAAAAAGACAGAGAAACTATAGAGCGATTATAAAAACAGCAGAGGAAACGGTGGCGCGTAGATTAAGAGAAAAAGAAATGGATTTAGAAAAAGCTACGCGCAGAAACATGGAATTAGAATCACGCGCGGCGCATCTTAGAACAGAAGCGCAACTTTGGCAAGCAAAAGCTAAAGAACAAGAAGCAACAGCTATATCTCTTCAAAACCAACTGCATCATGCTATGATGAACGGTGGCGTAGAAAATAGAGGAGAAGAAGGATGTGGGCTATCGTGCGCATTAGGTGTTGAAGGTCAAGCTGAAGATGCGGAATCGGGTTATATTGATCCGGATCGGGTTGTTATTTCGGGTCCTAAATGTAAAGGTTGTGAAAAACGGGTTGCTTCGGTTGTTGTGTTGCCGTGTCGTCACTTATGTGTTTGTAACGAATGCGACACACATTTCCGTGTTTGCCCCGTTTGTCTCACCGTTAAAAATTCAACCGTTGAGATTTATCTATCTTAG 966 0.3996 MAVQAQYPSNVHEYSLQPQPDQSNIILFNTPGTNNSRKRGRETGVIQSSHNIMNPFSLQSHSPHLIDLTQLHNQQQHHQQHQNIVSTGLGLSFGDQQQQQQRLQFQQQQQQNGFHSSQFLSLLSHGLSSQIKQQKDEIDQFLQAQGEELQRTLEEKRQRNYRAIIKTAEETVARRLREKEMDLEKATRRNMELESRAAHLRTEAQLWQAKAKEQEATAISLQNQLHHAMMNGGVENRGEEGCGLSCALGVEGQAEDAESGYIDPDRVVISGPKCKGCEKRVASVVVLPCRHLCVCNECDTHFRVCPVCLTVKNSTVEIYLS* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5579 321 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 320 - -
Tpr2g5579 321 Coils Coil 169 224 - -
Tpr2g5579 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 321 IPR013083 -
Tpr2g5579 321 Pfam Zinc finger, C3HC4 type (RING finger) 273 310 - -
Tpr2g5579 321 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 320 IPR017066 -
Tpr2g5579 321 PIRSF SBP1_RNase_bind 1 321 IPR017066 -
Tpr2g5579 321 ProSiteProfiles Zinc finger RING-type profile. 274 308 IPR001841 -
Tpr2g5579 321 Coils Coil 139 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5579 Tpr-Chr2 64535297 64537234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5579 274 310 Miscellaneous Gene Families AT4G39050 40.541 4.68e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5579 K19042 - gmx:100779548 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5579 2 64535297 64537234 Tpr4g3869 4 44879357 44881246 PCT