Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3208 ATGGGAAATGTGAAATTGCAAATGCAAACTGGTATCAATGCAATGGAAGAGGAAGCTGGGCAGAGTGGTGCTGGATATCCTAGCAGGACTACTGTGGCATGCATGATTAATGCAGAAATCGGTGCTGTTTTGGCAGTCATGCGAAGAAATGTTAGATGGGGTGTTCATTATATGTCAGATGATGATCAATTGGAGCACTCCCTTGTTCAGTCTTTAAAGGCATTAAGGCGGCAAATTTTTTCATGGCACAGTCAGTGGCATGTCATAAACCCTGTCTTGTATCTCCAGCCTTTTCTGGATGTGATTCAATCAGATGAAACTGGTGCACCAATTACTGGTGTTGCTCTGTCGTCTGTTTACAAGATCTTAACTCTCGATGTAATTGATCAAAACACTGTCAATATTGGGGATGCCATGCACTTGGTAGTTGATGCTGTCACAAGTTGCAGATTCGAGGTGACCGATCCAGGATCCGAAGAAGTGGTATTAATGAAAATATTACAAGTTCTTCTGGCATGTGTGAAAAGTAAAGCATCCGTAATGCTGAGTAACCAACATATTTGCACCATAGTAAACACTTGTTTCCGTATAGTTCATCAAGCAGGAACCAAAAGTGAGTTGCTTCAGAGAATAGCTCGGTACACAATGCATGAACTTGTTCGGTCTATTTTCTCTCACCTTCAAGACATAGATGTCACAGAGCATGCATTGGAAAATGGGAGCGCTGCTTTAAAAGAAGAGATTGATGGGCAAAAAAATGAGCATAATTCTGCAAACAGTCAATTGGAAAATGGTAGTCTGATTTCTGCAAGTGACAGTCAATCTGTATCCACAGGCGTTGCTTCCAGTACTTTGAGTGATGTGGCAGCAATAATAGTGGATGTAAACGCTGCTGCAAGCAGTGGCAAGGAGACTGATCCGAATGAACAGCTCATGAATGAACCGTATGGAATTCCTTGCATGGTGGAAATATTTCATTTCATGTGTTCACTTTTGAATGTTGTTGAGCATATGGGAATGAGTCCTCGATTAAACACAATTGCATTTGATGAAGACGTTCCTCTTTTTGCCTTAACTTTGATTAATTCGGCCATAGAGTTGGGAGGGTCTTCCTTTCACCGACACCCTAAGTTGTTGAGCTTAATTCAGGATGAATTATTCGGCAATCTTATGCAATTTGGTTTGTCAATGAGTCCCCTTGTACTTTCCATGGTAAGTAGCATTGTTTTAAATTTGTATCACCATCTTCGTACAGAACTCAAGTTACAACTAGAAGCATTTTTTTCTTGTGTAATTTTGAGGCTTGCACAAAGCAAATACGGGGCTTCATATCAACAACAGGAAGTAGCCATGGAGGCACTTGTTGACTTCTGCAGGCAAAAAGCATTTGTGGTGGAGATGTATGCTAACTTTGACTGTGACATAACTTGCAGTAATATCTTTGAAGACATTGTTAATTTGTTGTCCAAGAGTGCATTTCCTGTGAACAGTCCATTATCTACCATGAATATTCTTGCTTTGGACGGTCTTATTGCTGTCATACAAGGAATGGCCGAAAGGATAGGTAACGGATCTTTGAGTTCAGAACATTCTATTGTGAATCTTGAAGAGTATACTCCATTCTGGCTTGAAAAGTGTGAAAATTTCACCGAGCCAAATAATTGGGTTCCTTTTGTTGGTCGAAGAAAGCAATTCAAGAAAAGATTGATGATTGGAGCCGATCATTTTAATCGTGATACTAAGAAAGGTCTTCAGTTTCTCCAAGGAACACATCTTTTGCCCGAGAAACTTGATCCCCAAAGTGTTGCCTTCTTTTTCAGATACACTACTGGGTTGGATAAGAATCTCATTGGTGATTACCTTGGAAACCATGATGAATTCTGTGTTGAGGTTCTTCATGAATTTGCTAGAACATTTGATTTCAATGACATGGCATTGGATACAGCCCTGCGTATTTTTTTGGAAACTTTCAGATTGCCCGGAGAATCACAGAAGATCCAGAGGGTGCTTGAAGCTTTCTCAGAGAGATATTATGAGCAGTCACCACATATCCTAGCTAACAAGGATGCGGCTCTCTTGTTATCATATTCAATTATAATGCTTAATACAGATCAGCACAACTCACAGGTCAAAAAGAAGATGACAGAAGAAGATTTTGTCCGAAATAATAGGCGAATAAATGGTGGCAATGATCTACCCCGAGAAGTCCTGTCTGGACTATTTCATTCGATTTGTAAAAATGAGATCCGGACAACTCCTGAGCAAGGTTCTACTTTTCCTGAAATGACCCCAAGTCGGTGGATATATCTCATACACAAGTCAAAAAGCACAGCTCCCTTCATTGTTTCTGATTGCAAAGCACACCTTGATTATGATATGTTTGCCATATTGTCTGGTCCGACAGTTGCTGCCGTTTCTGTTGTATTTGACAATGCTGAAACTGAAGTGGTGTACCAAACATGTATGGATGGATTCTTAGCTGTTGCAAAGGTATCAGCTTATTATCATCTTGACAGTATACTAGATGATTTGGTTGTGTCACTTTGTAAGTTTGTTACTATTTTGGATCCGTTATCTCCCGAGGAGTCAATTTTAGCCTTTGGAGAGGACATAAAAGCAAGAATGGCAACTGAGACTGTTTTCACCATTGCGAATCGGTATGGTGATTACATCCGCACAGGGTGGAGGGATATTCTCGATTGTATCTTGAAATTTCACAAGTTAGGTCTTCTTCCTTCTCAAATGGCCAATGATGCAGCCGAAGAGTCAGAGCCTTCTACAGAAACAGAGAATGGGAAACGTTATGCTAATTCTTTAGCTTCATCTCAGCTTGTCTCTGTTAATACTCCAAAGAGATCCTCAGGATTGATCAGCAGGTTTAGTCAACTCTTATATCTTGGCGCCGAAGAGACAAAATCAGAACCAACTGAAGAACAACTTGCTGCTCAGCAGAGTTCTCTTCAAACAATTCAGAAGTGTCACATTGGGAGCATATTTACTGAGAGTAAGTTTTTGCAAGCTGATTCTCTATTGCACCTTGCTAAAGCACTCAAAAGCGCAGGAGTGAAGCCTAAGAAAGGGTCTGAGGATGAAGATACTTCAGTTTTCTGCCTGGAGTTGCTGGTAGCAATCACTCTGAATAACAGAGATAGAATTGAACTTCTTTGGCCAGATGTTTATGAGCATATTTCCAATATTGTGCAATCAACTGTGATGCCTTGTGCACAGGTAGAGAAGGCTGTTTTTGGACTCTTAAGGATTTGCCATCGCTTACTTCCCTACAAAGAGAACATTACCGATGAGCTTTTGAAGTCACTTCAACTTGTCCTGAAGCTTGATGCAAGGGTTGCTGATACATACTATGAACAGATTACACAGGAAGTTAGTAACCTTGTGAAGGCAAATGCTTCTCACATTAGATCTCAGTTAGGATGGCGGACGATAACATCACTGCTTTCCATCACTGCTAGACACTTGGAATCATCCGAGGCTGGATTTGATGCTTTGTTTTTCATTATGTCAGATGGAGCCCACATACTTCCAGCTAATTTTGTTCTTTGTGTAGATGCTGCAAAGCAATTTGCCGAGTCTCGTGTTGGACAGGTCGAGCGGTCTGTAGTGGCACTTGATCTATTGGCAGGGTCTGTCAATTGTCTTGAGAAGTGGACTAATGATGCTAAGCAAGTAATGGAAGAAGAGGAAGTGGCAAAGATGTTGCAGGATATTGGGGACATGTGGTTGAGGCTTGTACAGGGACTAAAAAAACTATGTTTGGACCAAAGAGAAGAGGTTCGAAACCATGCGTTGTTATTGTTGCAGAATTGCTTAACAGGATCAGTTGGAATTCATATCCCACATGAGTTGTGGTTACAATGTTTTGATCAAGTGATCTTCACCGTGCTTGATGACCTACTTGAAATTTCTCAGACACACTCTCCAAAGGACTACCGAAACATGGAAGGAACACTTGTTCTTGCCGTGAAGCTCTTGTCCAAAGTTTTCCTGTTGTTACTCCAAGACTTATCACAATCTACAGACTTCAGCAAATTATGGTTGGGGGTGTTAAGTCGTTTCGAAATATTTATGAAGGTGAAAATTAGGGGAAGGAAAAGTGAGAAGTTTCAAGAGCTTGTACCTGAGCTTCTCAAGAACACTTTGCTTGTTATGAAAGCAGGTCGTGTACTGGAACGAAGCAGTAGTAGTGGAGATGAAAACAGTTTATGGGAACAGACATGGCTGCATATAAATAATATCGCCCCATCGTTACAATCTGAGGTTTTCCCTGAGCAAGATTCTAAGCAATTGGAGCAGAAACAGACTGAACAAGTTGGAGATAGAGGGCCTGCTGAGAATGTTTCTGTGCCTTCAAATGAAACAGCAGGCGAAGATGGTACTGGTAATGGTATTGGTTAA 4413 0.4088 MGNVKLQMQTGINAMEEEAGQSGAGYPSRTTVACMINAEIGAVLAVMRRNVRWGVHYMSDDDQLEHSLVQSLKALRRQIFSWHSQWHVINPVLYLQPFLDVIQSDETGAPITGVALSSVYKILTLDVIDQNTVNIGDAMHLVVDAVTSCRFEVTDPGSEEVVLMKILQVLLACVKSKASVMLSNQHICTIVNTCFRIVHQAGTKSELLQRIARYTMHELVRSIFSHLQDIDVTEHALENGSAALKEEIDGQKNEHNSANSQLENGSLISASDSQSVSTGVASSTLSDVAAIIVDVNAAASSGKETDPNEQLMNEPYGIPCMVEIFHFMCSLLNVVEHMGMSPRLNTIAFDEDVPLFALTLINSAIELGGSSFHRHPKLLSLIQDELFGNLMQFGLSMSPLVLSMVSSIVLNLYHHLRTELKLQLEAFFSCVILRLAQSKYGASYQQQEVAMEALVDFCRQKAFVVEMYANFDCDITCSNIFEDIVNLLSKSAFPVNSPLSTMNILALDGLIAVIQGMAERIGNGSLSSEHSIVNLEEYTPFWLEKCENFTEPNNWVPFVGRRKQFKKRLMIGADHFNRDTKKGLQFLQGTHLLPEKLDPQSVAFFFRYTTGLDKNLIGDYLGNHDEFCVEVLHEFARTFDFNDMALDTALRIFLETFRLPGESQKIQRVLEAFSERYYEQSPHILANKDAALLLSYSIIMLNTDQHNSQVKKKMTEEDFVRNNRRINGGNDLPREVLSGLFHSICKNEIRTTPEQGSTFPEMTPSRWIYLIHKSKSTAPFIVSDCKAHLDYDMFAILSGPTVAAVSVVFDNAETEVVYQTCMDGFLAVAKVSAYYHLDSILDDLVVSLCKFVTILDPLSPEESILAFGEDIKARMATETVFTIANRYGDYIRTGWRDILDCILKFHKLGLLPSQMANDAAEESEPSTETENGKRYANSLASSQLVSVNTPKRSSGLISRFSQLLYLGAEETKSEPTEEQLAAQQSSLQTIQKCHIGSIFTESKFLQADSLLHLAKALKSAGVKPKKGSEDEDTSVFCLELLVAITLNNRDRIELLWPDVYEHISNIVQSTVMPCAQVEKAVFGLLRICHRLLPYKENITDELLKSLQLVLKLDARVADTYYEQITQEVSNLVKANASHIRSQLGWRTITSLLSITARHLESSEAGFDALFFIMSDGAHILPANFVLCVDAAKQFAESRVGQVERSVVALDLLAGSVNCLEKWTNDAKQVMEEEEVAKMLQDIGDMWLRLVQGLKKLCLDQREEVRNHALLLLQNCLTGSVGIHIPHELWLQCFDQVIFTVLDDLLEISQTHSPKDYRNMEGTLVLAVKLLSKVFLLLLQDLSQSTDFSKLWLGVLSRFEIFMKVKIRGRKSEKFQELVPELLKNTLLVMKAGRVLERSSSSGDENSLWEQTWLHINNIAPSLQSEVFPEQDSKQLEQKQTEQVGDRGPAENVSVPSNETAGEDGTGNGIG* 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3208 1470 SMART sec7_5 562 749 IPR000904 GO:0005085|GO:0032012
Tpr4g3208 1470 SUPERFAMILY ARM repeat 160 1336 IPR016024 -
Tpr4g3208 1470 MobiDBLite consensus disorder prediction 1426 1470 - -
Tpr4g3208 1470 Gene3D - 642 760 IPR023394 -
Tpr4g3208 1470 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 319 480 IPR032691 -
Tpr4g3208 1470 ProSiteProfiles SEC7 domain profile. 558 747 IPR000904 GO:0005085|GO:0032012
Tpr4g3208 1470 Coils Coil 241 261 - -
Tpr4g3208 1470 Pfam Sec7 domain 566 749 IPR000904 GO:0005085|GO:0032012
Tpr4g3208 1470 Gene3D - 559 641 - -
Tpr4g3208 1470 CDD Sec7 566 749 IPR000904 GO:0005085|GO:0032012
Tpr4g3208 1470 PANTHER PATTERN FORMATION PROTEIN GNOM PROTEIN 11 1456 - -
Tpr4g3208 1470 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11 1456 - -
Tpr4g3208 1470 SUPERFAMILY Sec7 domain 562 757 IPR035999 GO:0005085|GO:0032012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3208 Tpr-Chr4 38056200 38065193 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3208 K18443 - gmx:100784083 2417.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3208 4 38056200 38065193 Tpr3g0077 3 988219 995127 PCT