Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3188 ATGGCTCACTGTTATACCAAGGATACCGGTATAGAGGTATCCGAATTGATTTGGTGGTATGTCGTTTCATCTTACGAAGAACTCCAAGCGGGGAGACACAAAGTGAAAACCTCAGCCGATACTTTTAGTTGTCCATACTGCCCCGAGAAGAAACATGATTATAAGTACATTGAACTCTTTAATCATGCCACTGGAATTGGTAGGAGTAGTTCGGATAAGAGAAGTGCTAAAGAGAAGGGTAGTCATCTGGCTTTGGTAAATTATTTGGAACAAGATCTTAGGAGCAAGGACGGTGTTTCGAAACCTGTAGATCAAGGTACAAACACAATAACTCCAGGACAAACTGTAATGTCTCACTGTGCTTTCAAGGATACCGATATAAATTGGTGGTATGTAGATTCAGCTTATGAAGAGCTCACAAATGGAACTCGCAATGTGAGAACACCAAACGAGGCTTTCATCTGTCCGTACTGCCCAAACAGAAAACAAGATTATGCATACAGGGAACTCCTAGAACATGCTTTTATGGTCGGTCGGAGTAGTTCAGATAAGAGAAGTGCTAGAGAGAGGGCTAATCATCTCGCTTTGTTGAAATATTTGGAAAAGGATATTACAAGTATGCCTGGACCGTCAAAACCTGTCGATAAAGGTACAAAATTGATAATCCAAGGGCCGACTGTCGCGGTCGTGGCTCAATGCTCTAACAACAATAATAATTCAAGTGAATCTAGAATAAGTTGGTTGTATATAGATAGATTTTATAAAGAACTCAAGAATGGAAGTCTCAAAGTGAGAATCTCAGATGATACTTTCACTTGTCCATACTGCCCAAAAATGAAAAAACCGCACTATGTGTACAGGGAAATCCTTGAACATGCTTCTGGGGTCGGTCAGAGTACTTCGCAAAAGAGAAGTCATAAAGAGAAGGCAACTCATCTTGCTTTAATGAAATATCTGAAAGAGGATATTATCATAGATGTGGCGGCTCCATCAAAACCTGCGAATGAAGGCAGCGTAATACAAAGCCGAGAAGAAAATCTGACCACTGGCAGCGCTGACATAGATTCTGATAAAAGTGCATCTCAAATAGACATAGTGCAATTAAAAAAAGCATATGCACAACTCAAAAGGGGGAGTCAAACTGTGCAAACCTCAGCCGATACTTTCATTTGCCCATACTGCCCTAATAGAAAGAGGAAACGGGATTACGTGTACAGGGAAATCATGGAACATGCTTCTGGGGTGGGTTGGAGTATCTCACAAACTAGAAGTGCCATTGAAAAGGCGAATCATCTGGCTTTGGTCAAATATTTGAAAAGGGATCTTATAAATGTCGGCGGTCCTTCAGTATCCACGAATGGAGGCACCATAGCATCGAACCGAGGAGAAACTGTAACAGGTCATCAGTCCGAGAAGGATACTAATAAAAGGGCATCTCAAATAAATGTGTTGTTTGTAAAGAAATCCTATGAAGATCTCAAAAGGGGAACTCGCAAGGTCAAAACATCAGCAGAAACTTTCACATGTCCGTATTGCCCTAAGAGAAAATACAATTATAGGTACAGTGAACTCCTTAATCATGCTTTAGGGGTTGGTCAGAGTGACTCAGAAAAGAGAAGTGTATTGGAAAAGGCCAATCATCTAGCTTTAGTGAAATATTTGGAAAAGGATCTTATGATTATGAATGTGGAACATCCAAAACCTGCAAATAGATATTTGGAAAATAATCATATGAATGTGGAACAGCATCCACCGAAACCATTAAATGAAGGCATTCTTGTCAATTCCGAAAAGCATTTCGTGTGGCCGTGGACTGGGATTGTGATTAACATTCCTACGATACAGACAGAAGATGGACGATGTTTTGGTGAAAGTGGTTCCAAGCTAAGGGATGAATACCGAAGTAGGGGTTTTAATCCACGTAGAGTCCGTACACTTTGGAATGACTGGGGTCACACTGGAGCCGCAGTTGTGGAATTCGATAAAAGTTGGATAGGGTTATATAATGCAGTTGCATTTGAAAGGGCATATGAATTAGATCATCATGGGAAAAAGGACTGGCTTTCTTTTACCGAACAAAAGTCCGGTCTTTATGGATGGGTTGCTCGAGCTGATGACTACTACATGAACAACATAATCGGGGAACAACTACAGAAGATGGGGGATGTCAAAACAATATCTGAAATCATGGAATCAGAAGCTAGAAGGTTCAATATGCTTGTTCAGAATATGCATAACAATGTTCAGGTAAAGAACAACAAGATAAAAGAAATGGAAGTAGTATGCAATGCAATTACACTTCGCATGGACATTGTGATGCGCGAAATAGATAGTCTCTCTCTATCGCACAGTCAAGAGTTGAAGAAAATACAGTCAAGTGCAACTCAACACTTTCAGAGTATTTTGAATGGTCATGAAAGGCTCAAGTTGCAACTGGATTCTCAGAAAAAACAGCTTGAGTTGCGAAGAATTGAACTGGAAAAACGCGAGGCGCATAATGAAAGTGAAAGAAAAAAGTTGGAAGACGAGATGAACCAGACTGCAACGAAAGACCGCTTTCTGCAAATGGCTGCTCTGGAGCAACAGAAAGCCGGGGAAAATGTTTTGAAACTGGCTGCAGATCAAAAGAGGCAAAAAGAACAATTCCATGCTAAAATCATCCAGCTTGAGAAACAACTAAATGTGAAACAAAAACTGGAGTTGGAGATTCAGCAATTAAAAGGAAAACTAAATGTCATGAAGCACATGGAAGACGAAGGGGATTTCGATGTTCTGGATATGATGGATGCTTTACATTTAGATTTAAGAGAGAAAGAACAGTCACTTCGAGACATGGACGCGTTGAACCAAACGCTGATCATTAAAGAGCGCAAGAGCAATGATGAACTGCAAGAAGCTCGAAAGGAATTGATTACGTGCATTAAGGAGATACCTAGTCGTGCTGCAATTGGTGTGAAGAGAATGGGGGAGCTAGATATTAGACCATTCCTAGAAGCTATGAAGAAAAAATATAATGCGGATGATGCAGAAGATCGAGCTTCAGAATTGTGTTCGTTATGGGACGAGTATCTGAAGGACCCTGACTGGCATCCATTTAAAATTGCTACAATTCAAGGGAAACATCAGGAAGATATAGATGATGAAGATGAAAAGCTGAAAGGACTGAAAAACGAGGTGGGCGAAAAAGTCTACAAAGCTGTGGTGACAGCATTGAAAGAGATAAATGAATATAATCCAAGTGGGCGGTACATAACCTTGGAATTATGGAATTATGCTGAGGGAAAGAGAGCGACTTTGCAAGAAGGAGTACAAGTTTTATTGAAGCAGTGGAAATTACATAGACAAAAGATGGGAATGTTATGA 3363 0.4032 MAHCYTKDTGIEVSELIWWYVVSSYEELQAGRHKVKTSADTFSCPYCPEKKHDYKYIELFNHATGIGRSSSDKRSAKEKGSHLALVNYLEQDLRSKDGVSKPVDQGTNTITPGQTVMSHCAFKDTDINWWYVDSAYEELTNGTRNVRTPNEAFICPYCPNRKQDYAYRELLEHAFMVGRSSSDKRSARERANHLALLKYLEKDITSMPGPSKPVDKGTKLIIQGPTVAVVAQCSNNNNNSSESRISWLYIDRFYKELKNGSLKVRISDDTFTCPYCPKMKKPHYVYREILEHASGVGQSTSQKRSHKEKATHLALMKYLKEDIIIDVAAPSKPANEGSVIQSREENLTTGSADIDSDKSASQIDIVQLKKAYAQLKRGSQTVQTSADTFICPYCPNRKRKRDYVYREIMEHASGVGWSISQTRSAIEKANHLALVKYLKRDLINVGGPSVSTNGGTIASNRGETVTGHQSEKDTNKRASQINVLFVKKSYEDLKRGTRKVKTSAETFTCPYCPKRKYNYRYSELLNHALGVGQSDSEKRSVLEKANHLALVKYLEKDLMIMNVEHPKPANRYLENNHMNVEQHPPKPLNEGILVNSEKHFVWPWTGIVINIPTIQTEDGRCFGESGSKLRDEYRSRGFNPRRVRTLWNDWGHTGAAVVEFDKSWIGLYNAVAFERAYELDHHGKKDWLSFTEQKSGLYGWVARADDYYMNNIIGEQLQKMGDVKTISEIMESEARRFNMLVQNMHNNVQVKNNKIKEMEVVCNAITLRMDIVMREIDSLSLSHSQELKKIQSSATQHFQSILNGHERLKLQLDSQKKQLELRRIELEKREAHNESERKKLEDEMNQTATKDRFLQMAALEQQKAGENVLKLAADQKRQKEQFHAKIIQLEKQLNVKQKLELEIQQLKGKLNVMKHMEDEGDFDVLDMMDALHLDLREKEQSLRDMDALNQTLIIKERKSNDELQEARKELITCIKEIPSRAAIGVKRMGELDIRPFLEAMKKKYNADDAEDRASELCSLWDEYLKDPDWHPFKIATIQGKHQEDIDDEDEKLKGLKNEVGEKVYKAVVTALKEINEYNPSGRYITLELWNYAEGKRATLQEGVQVLLKQWKLHRQKMGML* 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3188 1120 Coils Coil 802 846 - -
Tpr4g3188 1120 Pfam XH domain 986 1116 IPR005379 -
Tpr4g3188 1120 Pfam XS zinc finger domain 155 196 IPR005381 GO:0031047
Tpr4g3188 1120 Pfam XS zinc finger domain 509 551 IPR005381 GO:0031047
Tpr4g3188 1120 Pfam XS zinc finger domain 273 315 IPR005381 GO:0031047
Tpr4g3188 1120 Pfam XS zinc finger domain 44 86 IPR005381 GO:0031047
Tpr4g3188 1120 Pfam XS zinc finger domain 391 435 IPR005381 GO:0031047
Tpr4g3188 1120 PANTHER RIBONUCLEASE P SUBUNIT P38 50 107 IPR045177 GO:0080188
Tpr4g3188 1120 PANTHER RIBONUCLEASE P SUBUNIT P38 355 398 IPR045177 GO:0080188
Tpr4g3188 1120 PANTHER RIBONUCLEASE P SUBUNIT P38 514 1119 IPR045177 GO:0080188
Tpr4g3188 1120 PANTHER RIBONUCLEASE P SUBUNIT P38 231 278 IPR045177 GO:0080188
Tpr4g3188 1120 PANTHER RIBONUCLEASE P SUBUNIT P38 279 337 IPR045177 GO:0080188
Tpr4g3188 1120 PANTHER RIBONUCLEASE P SUBUNIT P38 1 51 IPR045177 GO:0080188
Tpr4g3188 1120 PANTHER RIBONUCLEASE P SUBUNIT P38 398 453 IPR045177 GO:0080188
Tpr4g3188 1120 PANTHER RIBONUCLEASE P SUBUNIT P38 160 219 IPR045177 GO:0080188
Tpr4g3188 1120 PANTHER RIBONUCLEASE P SUBUNIT P38 117 162 IPR045177 GO:0080188
Tpr4g3188 1120 PANTHER RIBONUCLEASE P SUBUNIT P38 468 516 IPR045177 GO:0080188
Tpr4g3188 1120 Coils Coil 949 969 - -
Tpr4g3188 1120 Pfam XS domain 597 708 IPR005380 GO:0031047
Tpr4g3188 1120 Gene3D XS domain 594 763 IPR038588 -
Tpr4g3188 1120 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 117 162 - -
Tpr4g3188 1120 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 355 398 - -
Tpr4g3188 1120 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 50 107 - -
Tpr4g3188 1120 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 279 337 - -
Tpr4g3188 1120 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 231 278 - -
Tpr4g3188 1120 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 514 1119 - -
Tpr4g3188 1120 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 468 516 - -
Tpr4g3188 1120 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 398 453 - -
Tpr4g3188 1120 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 1 51 - -
Tpr4g3188 1120 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 160 219 - -
Tpr4g3188 1120 Coils Coil 872 916 - -
Tpr4g3188 1120 Coils Coil 1038 1058 - -
Tpr4g3188 1120 CDD RRM_like_XS 600 707 IPR005380 GO:0031047
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3188 Tpr-Chr4 37720711 37729371 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3188 - - gmx:100806426 1433.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3188 4 37720711 37729371 Tpr4g3188 4 37720711 37729371 ECH
Tpr3g0104 3 1339264 1345942 Tpr4g3188 4 37720711 37729371 PCT