Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3152 ATGGATGATGAAGCACGCAAGATCTTCAGCAAATTCGATACAAACGGCGACGGAAAAATCTCTTCATCGGAGTTAAAGGAGATGCTTCTCACGCTCGGAACCAGAACCAATTCCGATGAAGTGAAACACATGATGGATGCAATTGATCAGAACGGTGACGGTTACATTGATCTAAAGGAATTCGCCGATTTTCACTTCACCGATGCAGGAAAAGATAACTCCGATGAGCTTCTTGATACTTTTAATCTCTTCGATCTTGATAAAAACGGTCTCATCTCTGCTGATGAATTGCACGCTATGTTGAAGAAACTCGGTGAGAATTGCTCGCTCAGTGATTGCAAGAATATGATAAGTAATGTTGATGTTGACGGTGATGGATACGTGAACTTCGAGGAGTTCAAGAAGATGATGGCTCGCTGA 420 0.4238 MDDEARKIFSKFDTNGDGKISSSELKEMLLTLGTRTNSDEVKHMMDAIDQNGDGYIDLKEFADFHFTDAGKDNSDELLDTFNLFDLDKNGLISADELHAMLKKLGENCSLSDCKNMISNVDVDGDGYVNFEEFKKMMAR* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3152 139 ProSitePatterns EF-hand calcium-binding domain. 121 133 IPR018247 -
Tpr4g3152 139 SMART efh_1 112 139 IPR002048 GO:0005509
Tpr4g3152 139 SMART efh_1 76 104 IPR002048 GO:0005509
Tpr4g3152 139 SMART efh_1 4 32 IPR002048 GO:0005509
Tpr4g3152 139 SMART efh_1 40 68 IPR002048 GO:0005509
Tpr4g3152 139 ProSiteProfiles EF-hand calcium-binding domain profile. 108 139 IPR002048 GO:0005509
Tpr4g3152 139 CDD EFh 76 138 IPR002048 GO:0005509
Tpr4g3152 139 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Tpr4g3152 139 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 139 - -
Tpr4g3152 139 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Tpr4g3152 139 Gene3D - 69 139 - -
Tpr4g3152 139 CDD EFh 4 65 IPR002048 GO:0005509
Tpr4g3152 139 ProSitePatterns EF-hand calcium-binding domain. 49 61 IPR018247 -
Tpr4g3152 139 ProSiteProfiles EF-hand calcium-binding domain profile. 36 71 IPR002048 GO:0005509
Tpr4g3152 139 Pfam EF-hand domain pair 4 64 IPR002048 GO:0005509
Tpr4g3152 139 Pfam EF-hand domain pair 76 137 IPR002048 GO:0005509
Tpr4g3152 139 ProSiteProfiles EF-hand calcium-binding domain profile. 72 107 IPR002048 GO:0005509
Tpr4g3152 139 SUPERFAMILY EF-hand 3 138 IPR011992 -
Tpr4g3152 139 ProSitePatterns EF-hand calcium-binding domain. 85 97 IPR018247 -
Tpr4g3152 139 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 139 - -
Tpr4g3152 139 Gene3D - 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3152 Tpr-Chr4 37341432 37342307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3152 3 137 EF-hand Containing Proteins AT1G66400 50.725 3.67e-42 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3152 K13448 - gmx:100796491 199.904
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0134 3 1608604 1609342 Tpr4g3152 4 37341432 37342307 PCT