Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0134 ATGGACGAAGAAGTTCGCAAGATCTTCAACAAATTCGATAAGAACGGCGACGGGAAGATCTCGCGAACGGAGCTGAAGGAAATGATGGTGACGCTCGGATCTAAGACGACTTCGGAGGAAGTTAATCGTATGATGGAGGAGCTTGATCGGAACGGTGACGGTTATATTGATCTGAAGGAGTTCAGCGAATTACACAGCGGCGGTGGCGATGATAAGGAGCTTCGTGAGGCGTTTGAGTTGTATGATTTGGATAAGAACGGAGTGATCTCGGCGAAGGAACTTCACGCGGTGATGCGGCGGTTGGGGGAGAAGTGTTCTCTCGGTGATTGCCGGAGGATGATCGGAAACGTGGATGCGGATGCTGATGGTAATGTAAATTTCGAAGAGTTTAAGAAGATGATGAGTCGCTCCTAA 414 0.4903 MDEEVRKIFNKFDKNGDGKISRTELKEMMVTLGSKTTSEEVNRMMEELDRNGDGYIDLKEFSELHSGGGDDKELREAFELYDLDKNGVISAKELHAVMRRLGEKCSLGDCRRMIGNVDADADGNVNFEEFKKMMSRS* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0134 137 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Tpr3g0134 137 SMART efh_1 109 137 IPR002048 GO:0005509
Tpr3g0134 137 SMART efh_1 4 32 IPR002048 GO:0005509
Tpr3g0134 137 SMART efh_1 73 101 IPR002048 GO:0005509
Tpr3g0134 137 SMART efh_1 40 68 IPR002048 GO:0005509
Tpr3g0134 137 ProSiteProfiles EF-hand calcium-binding domain profile. 105 137 IPR002048 GO:0005509
Tpr3g0134 137 ProSiteProfiles EF-hand calcium-binding domain profile. 36 64 IPR002048 GO:0005509
Tpr3g0134 137 CDD EFh 4 66 IPR002048 GO:0005509
Tpr3g0134 137 Pfam EF-hand domain pair 72 135 IPR002048 GO:0005509
Tpr3g0134 137 Pfam EF-hand domain pair 3 63 IPR002048 GO:0005509
Tpr3g0134 137 ProSitePatterns EF-hand calcium-binding domain. 118 130 IPR018247 -
Tpr3g0134 137 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Tpr3g0134 137 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Tpr3g0134 137 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 137 - -
Tpr3g0134 137 Gene3D - 71 137 - -
Tpr3g0134 137 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Tpr3g0134 137 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 137 - -
Tpr3g0134 137 Gene3D - 1 70 - -
Tpr3g0134 137 CDD EFh 73 135 IPR002048 GO:0005509
Tpr3g0134 137 SUPERFAMILY EF-hand 3 136 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0134 Tpr-Chr3 1608604 1609342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0134 3 135 EF-hand Containing Proteins AT1G18210 57.895 9.28e-53 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0134 K13448 - gmx:100806813 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0134 3 1608604 1609342 Tpr4g3152 4 37341432 37342307 PCT