Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2708 ATGCCGACGCCGGTAAGTTCCGCTCGGCAATTTCTAACAGACGAAGCCGCGCGTGCATTAGACGAAGCAGTAACAGTCGCACGCCGTCGCTGCCACGCGCAAACAACCTCACTCCACGCCGTATCATCTTTACTTTCTCTACCATCTTCATCTCTCCGGGAAGCATGCTGCCGAGCACGAACCGCCGTCCGATTCTCCTCCAATCCGTCATTCTCGCATCGTCTCCAGCTCCGAGCACTCGAACTTTCCGTCAGTGTATCTCTCGACCGTCTTCCATCGGCGACATCGAAAACAACGGATGAGCCGCCGATTTCGAATTCACTCATGGCGGCAATCAAACGGTCACAAGCGAATCAGCGTCGGTCGCCGGAGAGTTTCCATTTCTATAATCAGAATCAAAACGGTTCATCTTTGTTGAAAGTTGAACTTAAACACTTTGTTTTATCGATTCTTGATGATCCAATTGTGAATCGTGTTTTTGATGAAGCTGGTTTTCGTAGCTGTGATGTTAAACTTGCTTTACTTCAACCACTGGTTCAATCTTCTTCTCGGTTTTTTTCTCCGCCGGTTTTTCTTTCTAATATTGAACAGGGTCGAACCGGTTTAGCTACTTTTTCTTTAGGGATTGATGAGAATTCAAGAAGAATTAGTGAGGTGATTTTGAAAAAGAAAAAGAGAAATCCTTTGTTGATGGGTGTTTATGCAAAAGATGCTTTTAGAAGTTTTTTTGAGTTGTTACAAAAGGGTCGAGGTGGTGCTTTGTTTCCACCTGGAATGTCTGGTTTGAGTGTTGTGTGTGTTGAAAAAGAGATTCTTGAGTTTGTAAAGCAAGGTGGGAGTGAAGAGAAAATGGGTTTGAGGTTTAAGGAATTGGGTTGTGAAGTTGAGAAGTGTTTGAGTCCTGGTGTTATTGTTGGGTTTGGAGAGATTGAGGTTTTTGTTGGAGATTCTATGAATGATGTTGCTGCTGTTAGGTTTGTTGTTTCGGAGTTGAGTAGGTTGTTGGAGATTCATGGTGAGAAGGTTTGGTTGATGGGTGTGGCTGGAAATTCCGAGGCTTATTCGAAGTTTTTGAGTTTGTTTCCGGGTGTTGAGAATGATTGGGATTTGCATTTGCTTACTGTGACATCTGCTACTCCTTCAAGGGAAGGACTATACTCTAAATCTAGTTTGATGGGGTCCTTTGTTCCATTTGGTGGATTCTTTTCTACACCTTCTGAAAGCAAAAGTCCAGTAAGTTCTACAAATTCATCTTTTACTCGTTGCGACAAATGCAATGAAAAGTATGAACAAGAAGTTGCCGATATTTTGAAGGTAGATTCTGCTACTCTGGCATCTAGTCAGTCAACAAGCTTGCCTTGGCTTAAAAAGGTCGTTGATGTGGATTCACATGGTGGACTGGATATGGCAAAGACTAATGAAGAAAATACAAATTTGAATAATAAGATATCGGAATTTCAAAAGAAATGGAATGATATTTGTCAACATCTTCATCAAACAAGGTCTCAAGTTCCATCCCTTGAGATTTTACGGTTTGGTTCAGGTTTTAAGGAAAGCAGCAGTAAAGATCCATCACATAATGAACTCCAATGTTCTACTCCATTTTCCTACACGCCTAAAGAGTTGCATGGCACGTTTCCATCAAAACAGTTATCACCTAGTCCGGTACATACCGATACAGTTGGTGTCAATGTTAGAACTGATCATGTGCCAAAAGTTACTGAGACTTGGCTAATTGATGTGGAGACTCGGGTTCCCCCTTCACGTATGGCTAATATGAGTGTGCTTGATAACAAATCATCTTCATCCCTTACTCCTGTGACCACAGATTTAGGACTGGGAACGTTATATACACCAATTGCCTGCAAGCCAGATATCCCAAAATTTCAAGATAAAATAAAGCATTTTGAGCACTTTTCACAGTCTGCTTCAGCTGATTGTGTTGCTATCGATAGAAATACATCACATCAGATTGCTAGATCTTCCTGTGCTGTCTCAAACTTGGCAACAAAATTTGATTCAGTAGATTTCAAGTCTCTTAATCAACTTTTCTCTGAAAAGGTTGGCTGGCAGGATCAGGCCATATGTGATATAAACCGAACTTTGTTCCTTCGTAAATCCAGCGAGGTAAAGAGTAGAGACTCGCATGGTAGAGCAGACATATGGTTTGCTTTCCTCGGACCAGATGTAATCGGGAAAAAGAAAATTGCTTCAGTACTTGCAGAGACTATATTTGGAAATGCAGAAAGCATAATCTCTGTGGATCTAGGCTTCCAGGACAGGGTTTACCCGTCGAACTCGATTTTTGAATGCCGAAAATCATTTTGTTATGATTTGTTTATGAGGAAGACAGTTGTGGACCATATTGCAGGGCAGTTGAGTAAAAATCCACATTCCGTCGTGTTTCTTGAAAATGTAGATAAAGCTGATTTTCTGGTGCAGAGTAGTTTATTGCAGGCAATAAGAAGAGGTAAATTTCCAGACTCACACGGAAGAGAAGTTAGCATCAATAACACAATCTTTATTTTAACCTCAACTGTCTCTAAAGGCAATGGCTCTTCTGCTTCGGAGTGCAGTAAAATGTTTTTTGAAGAAACAATCCTTGACGCCAAAAGATGTCAAATGCAATTGCTACTTGGAGATACATCAGAGGATGCCACAAGTAGCTTTAGTACAAATGTCAAGATTGTGCCGATAAAAGGGTTTTCAAAACCATTTCCGAATAAAAGAAAGCAGGCTGATACTAGTGACATGAAAGAGGGAGCAACAACCAAGATGCAAAAACAGGCACGCGAGACATCAATGTCCAATCTGGATTTAAATTTGCCTCTAGAAGAGGGCGAAGAGGGTATGGACAATAATGACCTTGAAAGAGAAATCGTAGTGGAAAACTCAGACTCGTGGTTTAGTGATTTCTGTGATCAGATGGATGAAAAAGTGATTTTCAAGCCATTCAATTTCAACGCGCTTGCTGAAAAATTACTAAAAAATATTAGCATACAATTTCAAAACACATTTGGTTCAGAATTTCAATTGGAAATTGATTATGAGGTAATGACACAGATACTTGCAGCTGCTTGGTTATCAGACAAGAAAAATGCAGTAGATGATTGGATTGAAAGTGTTCTAGGCAAAGGCTTCATTGAAGCTCAGAAGAAATACTACCCTGCAAATAAATATGTTGTGAAACTAGTTAACTGTGAATCTATTTTTGTGGAAGAGCCTGATCTTGGAGTATGCCTTCCAGCTAGCATTAACATGAAGTAA 3267 0.405 MPTPVSSARQFLTDEAARALDEAVTVARRRCHAQTTSLHAVSSLLSLPSSSLREACCRARTAVRFSSNPSFSHRLQLRALELSVSVSLDRLPSATSKTTDEPPISNSLMAAIKRSQANQRRSPESFHFYNQNQNGSSLLKVELKHFVLSILDDPIVNRVFDEAGFRSCDVKLALLQPLVQSSSRFFSPPVFLSNIEQGRTGLATFSLGIDENSRRISEVILKKKKRNPLLMGVYAKDAFRSFFELLQKGRGGALFPPGMSGLSVVCVEKEILEFVKQGGSEEKMGLRFKELGCEVEKCLSPGVIVGFGEIEVFVGDSMNDVAAVRFVVSELSRLLEIHGEKVWLMGVAGNSEAYSKFLSLFPGVENDWDLHLLTVTSATPSREGLYSKSSLMGSFVPFGGFFSTPSESKSPVSSTNSSFTRCDKCNEKYEQEVADILKVDSATLASSQSTSLPWLKKVVDVDSHGGLDMAKTNEENTNLNNKISEFQKKWNDICQHLHQTRSQVPSLEILRFGSGFKESSSKDPSHNELQCSTPFSYTPKELHGTFPSKQLSPSPVHTDTVGVNVRTDHVPKVTETWLIDVETRVPPSRMANMSVLDNKSSSSLTPVTTDLGLGTLYTPIACKPDIPKFQDKIKHFEHFSQSASADCVAIDRNTSHQIARSSCAVSNLATKFDSVDFKSLNQLFSEKVGWQDQAICDINRTLFLRKSSEVKSRDSHGRADIWFAFLGPDVIGKKKIASVLAETIFGNAESIISVDLGFQDRVYPSNSIFECRKSFCYDLFMRKTVVDHIAGQLSKNPHSVVFLENVDKADFLVQSSLLQAIRRGKFPDSHGREVSINNTIFILTSTVSKGNGSSASECSKMFFEETILDAKRCQMQLLLGDTSEDATSSFSTNVKIVPIKGFSKPFPNKRKQADTSDMKEGATTKMQKQARETSMSNLDLNLPLEEGEEGMDNNDLEREIVVENSDSWFSDFCDQMDEKVIFKPFNFNALAEKLLKNISIQFQNTFGSEFQLEIDYEVMTQILAAAWLSDKKNAVDDWIESVLGKGFIEAQKKYYPANKYVVKLVNCESIFVEEPDLGVCLPASINMK* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2708 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 670 1024 IPR027417 -
Tpr4g2708 1088 MobiDBLite consensus disorder prediction 907 932 - -
Tpr4g2708 1088 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1087 - -
Tpr4g2708 1088 Gene3D - 10 177 IPR036628 -
Tpr4g2708 1088 Pfam AAA domain (Cdc48 subfamily) 723 857 IPR003959 GO:0005524|GO:0016887
Tpr4g2708 1088 Gene3D - 654 896 IPR027417 -
Tpr4g2708 1088 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 723 741 IPR001270 GO:0005524
Tpr4g2708 1088 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 802 820 IPR001270 GO:0005524
Tpr4g2708 1088 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 835 849 IPR001270 GO:0005524
Tpr4g2708 1088 ProSiteProfiles Clp repeat (R) domain profile. 8 181 IPR004176 -
Tpr4g2708 1088 Coils Coil 469 489 - -
Tpr4g2708 1088 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1087 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2708 Tpr-Chr4 30084183 30089655 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2708 - - gmx:100804458 1341.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2708 4 30084183 30089655 Tpr4g2708 4 30084183 30089655 ECH
Tpr4g2708 4 30084183 30089655 Tpr7g0957 7 8841276 8849956 ECH
Tpr4g2708 4 30084183 30089655 Tpr3g3735 3 41679115 41685649 ECH