Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2384 ATGTCAAAACAAACATATAGTGTATGTTTATGTTGGCGTAGAAGATTCAAATTAGCTTTATCAGAAGCACCACAAGAGATCAAGACCCTTTTCAACAATTACTCAGAAAATGATCTCATGACAGCTACAAACCTTAAAAGATTCTTAATTGAAGTTCAAAAACAAGAACAAGCTACTGAAGAAGAAGCACAAGCTATCATTGATAGTTTCAAACATTTTCATAGAAGGGGTGCTGGACTTAATCTTGAAACTTTTTTCAAGTTTTTGTTTAGTGATAATAATCATCCTCTTTCACCTTCAATTGGGGTGCACCATGACATGACATTACCCTTGTCTCATTATTTCATATATACTGGTCACAATTCCTATCTAACCGGAAATCAGCTGAGCAGCGACTGCAGTGACGTTCCAATCGTGAATGCGTTGAAGAGAGGTGTGAGAGTAATTGAGTTGGACTTATGGCCTAATGCATCAAAGGATGACGTCGATGTTCTTCATGGGAGGACATTGACTACACCTGTAGAGCTCATTAGATGTTTGAGGTCTATTAAGGAACATGCCTTTGTCGCATCCGAATATCCGGTTGTAATAACCCTAGAAGACCATCTTACTCCAGATCTTCAGGCTAAAGTGGCTGAGATGGTTACTCAAACATTTGGAGAGATACTATTTACTCCTGGCTCGGAAAACTTGAAGGAATTTCCTTCTCCCGAATCACTAAAGAAGAGGATTATTATATCAACTAAACCACCTAAGGAGTACCTTGAGGTAAAAGAAGTAAAGGAAAAAGAGGATGATTCACTGCAAGGAAAGGCTTCGGGCGACGATGAAGCTTGGGGGAAGGAGATCGCGAGCTTCAAATGTGGCTCGTTATCCGATTACAAGGGAAACAACTTGGATAAAGATATTCACGACGAGGAAGATCTTTCCGAATCAGACAAGTCACATCATAATGTAGCTCCGGAATATAAAGGTTTAATTGCCATTCATGCTGGGAAGTCGAAAGGAGGAATAGAGGCATGGTTCAAAGTAGATCCGGATAAAGCCAAGCGTATAAGTTTAAGTGAGCAACAACTTGAAAAGGCTGTTATAACTCATGGAAAAGAAATTGTCAGGTTTACTCAGCGGAATATTCTGAGGGTGTTTCCAAAAGGTACTCGCATTGACTCGTCAAATTATAACCCGTTAATTGGTTGGATGCACGGTGCTCAAATGGTTGCATTCAACATGCAGGGATATGGGAGATCACTTTGGTTGATGCATGGAATGTTTAGAGCCAATGGAGGGTGTGGTTATGTTAAAAAACCAGATTTTCTCTTAAAAACTGATCCAAATAACGAGGTTTTTGATCCTAGAGCTAAGTTACCTGTGAAAACTACCTTGAAGGTGACTGTGTTTATGGGAGAAGGCTGGTATTACGATTTCAAGCATACACACTTTGATCAATATTCACCTCCGGACTTCTATGCAAGAGTGGGGATTGCTGGTGTCCCTAGTGATAGTATAATGAAAAAAACAAAGGCAATAGAGGATAATTGGTTGCCTACATGGAATGAGACATTTGAGTTCCCGCTTACCGTTCCGGAACTAGCCCTACTTCGTATAGAAGTTCACGAGTATGACATGTCTGAGAAAGATGACTTTGGTGGCCAAACATGCCTTCCTCTTTTGGAGTTAAGAAGCGGCGTTCGAGCAGTTTCACTTCATAGCCAGAAAGGCGATAAATACAATTCTGTCAAGCTTCTTATGCGCTTCGAATTTCTTTGA 1767 0.4024 MSKQTYSVCLCWRRRFKLALSEAPQEIKTLFNNYSENDLMTATNLKRFLIEVQKQEQATEEEAQAIIDSFKHFHRRGAGLNLETFFKFLFSDNNHPLSPSIGVHHDMTLPLSHYFIYTGHNSYLTGNQLSSDCSDVPIVNALKRGVRVIELDLWPNASKDDVDVLHGRTLTTPVELIRCLRSIKEHAFVASEYPVVITLEDHLTPDLQAKVAEMVTQTFGEILFTPGSENLKEFPSPESLKKRIIISTKPPKEYLEVKEVKEKEDDSLQGKASGDDEAWGKEIASFKCGSLSDYKGNNLDKDIHDEEDLSESDKSHHNVAPEYKGLIAIHAGKSKGGIEAWFKVDPDKAKRISLSEQQLEKAVITHGKEIVRFTQRNILRVFPKGTRIDSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMHGMFRANGGCGYVKKPDFLLKTDPNNEVFDPRAKLPVKTTLKVTVFMGEGWYYDFKHTHFDQYSPPDFYARVGIAGVPSDSIMKKTKAIEDNWLPTWNETFEFPLTVPELALLRIEVHEYDMSEKDDFGGQTCLPLLELRSGVRAVSLHSQKGDKYNSVKLLMRFEFL* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2384 588 SMART C2_3c 460 568 IPR000008 -
Tpr4g2384 588 Pfam Phosphatidylinositol-specific phospholipase C, X domain 107 249 IPR000909 -
Tpr4g2384 588 Gene3D C2 domain 455 588 IPR035892 -
Tpr4g2384 588 SUPERFAMILY EF-hand 17 106 IPR011992 -
Tpr4g2384 588 Pfam Phosphoinositide-specific phospholipase C, efhand-like 25 92 IPR015359 -
Tpr4g2384 588 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 105 249 - -
Tpr4g2384 588 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 353 439 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Tpr4g2384 588 Gene3D - 22 100 - -
Tpr4g2384 588 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 587 IPR001192 GO:0035556
Tpr4g2384 588 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 350 438 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Tpr4g2384 588 CDD C2_PLC_like 458 587 - -
Tpr4g2384 588 PRINTS Phospholipase C signature 110 128 IPR001192 GO:0035556
Tpr4g2384 588 PRINTS Phospholipase C signature 136 156 IPR001192 GO:0035556
Tpr4g2384 588 PRINTS Phospholipase C signature 233 250 IPR001192 GO:0035556
Tpr4g2384 588 PRINTS Phospholipase C signature 378 399 IPR001192 GO:0035556
Tpr4g2384 588 PRINTS Phospholipase C signature 399 417 IPR001192 GO:0035556
Tpr4g2384 588 PRINTS Phospholipase C signature 554 564 IPR001192 GO:0035556
Tpr4g2384 588 ProSiteProfiles C2 domain profile. 440 570 IPR000008 -
Tpr4g2384 588 CDD PI-PLCc_plant 104 427 - -
Tpr4g2384 588 SMART plcy_3 323 440 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Tpr4g2384 588 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 460 587 IPR035892 -
Tpr4g2384 588 SMART plcx_3 105 249 IPR000909 -
Tpr4g2384 588 SUPERFAMILY PLC-like phosphodiesterases 105 441 IPR017946 GO:0006629|GO:0008081
Tpr4g2384 588 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 2 587 - -
Tpr4g2384 588 Pfam C2 domain 481 562 IPR000008 -
Tpr4g2384 588 Gene3D Phosphatidylinositol (PI) phosphodiesterase 102 453 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2384 Tpr-Chr4 25345692 25350227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2384 1 588 Acyl Lipid Metabolism Gene Families AT3G55940 67.731 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2384 K05857 - gmx:547864 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0950 7 8745037 8749214 Tpr4g2384 4 25345692 25350227 ECH
Tpr4g2703 4 30035118 30039748 Tpr4g2384 4 25345692 25350227 ECH
Tpr4g2384 4 25345692 25350227 Tpr4g2384 4 25345692 25350227 ECH
Tpr7g0950 7 8745037 8749214 Tpr4g2384 4 25345692 25350227 PCT