Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2342 ATGGAAGCTCTCAATATCCTCTTCTTAGCAATTTTTGTTCTCTTGGCTTCTTTTGCTAATGCCAAAGTTCACGAGCACGAGTTTGTTGTTCAAGCAACTCCAGTGAAGAGGCTGTGCAACACACAAATGAGTATTACTGTAAATGGACAATTCCCTGGTCCAACTTTAGAAGTTAATAATGGAGATACTTTGGTTGTTAAAGTCACTAATAAAGCTCGTTACAATGTCACCATTCATTGGCATGGGATTAGGCAAATCAGAACAGGATGGGCTGATGGGCCAGAATTTGTGACACAATGTCCTATTCGTCCTGGTGAAAGTTACTCCTATAGATTTACCATTCAAGGACAAGAAGGTACACTTTGGTGGCATGCTCATAGTTCATGGCTTAGAGCCACTGTTTATGGAGCTCTGATCATTCATCCTAAGCAAGGAGATTCTTATCCTTTCACTAAACCAAAGCGTGAAACACCCATTCTTCTAGGGGAATGGTGGGATGCAAACCCTATTGATGTTATAAGACAAGCCACACAAACAGGAGCAGCTCCAAATATATCTGATGCATACACTATCAATGGTCAACCTGGTGATCTCTACAAGTGCTCTAGCAAAGGCACAACAATTGTTCCAATAGATTCAGGAGAAACAAATCTCATAAGAGTAATCAATGCAGCATTAAACCAACCACTTTTCTTCACAATTGCTAATCACAAATTAACAGTAGTAGGTGCTGATGCTTCCTATGTTAAACCATTCACAACCAATGTCCTAATGTTAGGACCTGGCCAAACCACTGATGTTCTAATCAATGGTGACCAACCACCATCAAGATACTACATCGCCGGACGCGCTTACCAATCCGCTCAAAACGCTCCATTCGATAACACAACAACTACAGCAATTCTTGAATACAAATCATCACCATGTCCTGCAAAAGGGGGTGCAAATATCAAACCTATTGCGCCTACTTTACCTAATTACAATGACACAAACACTGTTACTTCCTTTAGTAAAAGCTTTAGAAGTCTTAGAGAAGTTGAAGTTCCTACAGAAATTGATGAAGATCTTTTCTTTACTATTGGATTAGGACTCAACAGTTGTCCATCGAATTTCAACGCGAATCAATGTCAAGGACCGAACGGAACACGGTTCACTTCTAGTATGAACAATGTGTCTTTTGTACTTCCTAGCAATTTTTCAATCTTGCAAGCTCATAAACTTGGTGTTCAAGGTGTTTTTACTACCGATTTTCCCGCGAAACCTCCGGTGAAATTTGATTACACTGGTAATGTGAGTCGGTCGCTCTGGCAACCAATTCAAGGGACTAAAGTTACTAAGTTGAAATTTGGTTCAAGGGTTCAAATTGTTTTGCAAGATACTAGTATTGTTACTCCTGAGAATCACCCTATTCATCTTCATGGATATGATTTTTATATTGTTGCTGAGGGATTTGGAAATTTTAACCCTAAGAAAGATGCTTCAAAATTTAACCTTGTTGATCCACCTATGAGGAACACTGTGGCTGTGCCTGCTAATGGTTGGGCAGTTATCAGATTTGTTGCTGACAATCCAGGTGTTTGGATTATGCATTGTCACTTGGATGTTCACATTGGATGGGGTTTAGCCACTGTGTTCTTGGTAGAAGATGGAGAAGGACTATTAGAATCCATAGAATCCCCTCCTGAGGACCTGCCTTTGTGTTAG 1704 0.4014 MEALNILFLAIFVLLASFANAKVHEHEFVVQATPVKRLCNTQMSITVNGQFPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGIRQIRTGWADGPEFVTQCPIRPGESYSYRFTIQGQEGTLWWHAHSSWLRATVYGALIIHPKQGDSYPFTKPKRETPILLGEWWDANPIDVIRQATQTGAAPNISDAYTINGQPGDLYKCSSKGTTIVPIDSGETNLIRVINAALNQPLFFTIANHKLTVVGADASYVKPFTTNVLMLGPGQTTDVLINGDQPPSRYYIAGRAYQSAQNAPFDNTTTTAILEYKSSPCPAKGGANIKPIAPTLPNYNDTNTVTSFSKSFRSLREVEVPTEIDEDLFFTIGLGLNSCPSNFNANQCQGPNGTRFTSSMNNVSFVLPSNFSILQAHKLGVQGVFTTDFPAKPPVKFDYTGNVSRSLWQPIQGTKVTKLKFGSRVQIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFNPKKDASKFNLVDPPMRNTVAVPANGWAVIRFVADNPGVWIMHCHLDVHIGWGLATVFLVEDGEGLLESIESPPEDLPLC* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2342 567 SUPERFAMILY Cupredoxins 19 169 IPR008972 -
Tpr4g2342 567 Gene3D - 369 567 IPR008972 -
Tpr4g2342 567 TIGRFAM laccase: laccase 21 567 IPR017761 GO:0046274|GO:0048046|GO:0052716
Tpr4g2342 567 Gene3D - 155 346 IPR008972 -
Tpr4g2342 567 CDD CuRO_3_LCC_plant 412 550 IPR034289 GO:0005507
Tpr4g2342 567 ProSitePatterns Multicopper oxidases signature 2. 530 541 IPR002355 GO:0005507
Tpr4g2342 567 PANTHER LACCASE 5 567 - -
Tpr4g2342 567 SUPERFAMILY Cupredoxins 150 343 IPR008972 -
Tpr4g2342 567 PANTHER MULTI-COPPER OXIDASE 5 567 IPR045087 -
Tpr4g2342 567 CDD CuRO_1_LCC_plant 26 142 IPR034288 GO:0005507
Tpr4g2342 567 Pfam Multicopper oxidase 30 144 IPR011707 GO:0005507
Tpr4g2342 567 ProSitePatterns Multicopper oxidases signature 1. 525 545 IPR033138 -
Tpr4g2342 567 Pfam Multicopper oxidase 156 306 IPR001117 -
Tpr4g2342 567 Pfam Multicopper oxidase 417 550 IPR011706 GO:0005507|GO:0016491
Tpr4g2342 567 Gene3D - 24 154 IPR008972 -
Tpr4g2342 567 SUPERFAMILY Cupredoxins 349 567 IPR008972 -
Tpr4g2342 567 CDD CuRO_2_LCC_plant 158 304 IPR034285 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2342 Tpr-Chr4 24793462 24797333 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2342 K05909 - gmx:100796956 1066.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0998 7 9394300 9398392 Tpr4g2342 4 24793462 24797333 ECH
Tpr4g2342 4 24793462 24797333 Tpr4g2342 4 24793462 24797333 ECH
Tpr7g0998 7 9394300 9398392 Tpr4g2342 4 24793462 24797333 PCT