Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1730 ATGATGACAAAAATAACTACCCTTTTGTTCTTATTGCTCCTTGTTGGAGTAACCATAACAATGTCTGAAGATGAAGAAAAATCATCAAGTAAATTGTTCTTGATGGAAAATTCTAAGAGTGTTGTGAAAACTAATGCAGGGGAAATGAGGTTGTTTGTAAATAATGATGATAAGTTTTTGGATAGGAGCATGCACATTGGTTTGATTAATATGGAACCAAGATCATTGTTTGTGCCTCAATATCTTGACTCCAATTTGATCATATTTATCCGTAGAGGGGTAGCAAAGTTGGGATTCATATATGGAGATGAACTAGAGGAAAGGAGAATACAAACAGGAGACATATATGTAATTCCAGCAGGTTCTGTATTCTATTTAGTGAATATAGGTGAAGGTCAGAGACTTCATGTTATTTGCAGCATTGACCCCTCTACAAGCTTAGGTGACACTTTTCAGCCTTTCTATATTGGAGGAGATAATCAACAATCAATCCTTGGTGGATTCGGACCGACTATTCTTGAAACCACATTTAATGAATCAAGAGCAAAGATACAGAGAATCTTCAAGAAGAAACAAGATGGTCCAATTGTGTTCATTGATGATTCTCATTCTCCAAGCCTATGGACTAAATTCCTTCAACTGAAGAAGCAAGCCAAAGTACAAAAACTCAAGACATTGGTACAAAGCCAAGATGAAGATGAAGAGCAAAAGCAAACAAGTTGGTCATGGAGGAAGCTCATGGAAAGTGTATTAGGAAAAGCTAACAACATAGAGAACAAAGACAGAGCTGATTCTCCTGACTCTTACAACCTTTATGACAGAAAACCCGATTTCAGAAATGCTTATGGTTGGAGCAGTACATTGGATGGTGGCGATTATTCTCCACTTAAAATACCTGACATCGGTGTTTTTCATGTCAATCTCACCGCGGGATCTATGATGGCACCACATGTGAATCCAAGGGCATCAGAGTATAGCATAGTATTGAGAGTAAGAGTCCAAATACTATTTCCAAACGGAAGCAATGCAATGGAAACAGAAATCAAAGTAGGAGACATATTCTACATACCAAGATACTTCCCTTTCTGTCAAATAGCATCAAGAAATGGACCATTAGAGTTCATTGGATTCACAACCTCATCGGAAAAGAACAATCCACAGTTTCTAGCAGGTGCTGCATCACTTCTTAAGACTCTTTTAGGACCTGAACTTGCAGCATCATTTGGTGTGTCTGAAGACACACTCAGACATGTTGTTGATGCTCAACATGATGCTGTTATACTTTCTTCAACATGGGCTGCTCCTGGTGGCCCTGGCGGTGGCAGGGGCAAAAAAGAGGAAGATGTTTTGCATGTTGAAACTAAAGGTATTGAAGATGTTGTTATGGATGTTTTTGAATAG 1401 0.3847 MMTKITTLLFLLLLVGVTITMSEDEEKSSSKLFLMENSKSVVKTNAGEMRLFVNNDDKFLDRSMHIGLINMEPRSLFVPQYLDSNLIIFIRRGVAKLGFIYGDELEERRIQTGDIYVIPAGSVFYLVNIGEGQRLHVICSIDPSTSLGDTFQPFYIGGDNQQSILGGFGPTILETTFNESRAKIQRIFKKKQDGPIVFIDDSHSPSLWTKFLQLKKQAKVQKLKTLVQSQDEDEEQKQTSWSWRKLMESVLGKANNIENKDRADSPDSYNLYDRKPDFRNAYGWSSTLDGGDYSPLKIPDIGVFHVNLTAGSMMAPHVNPRASEYSIVLRVRVQILFPNGSNAMETEIKVGDIFYIPRYFPFCQIASRNGPLEFIGFTTSSEKNNPQFLAGAASLLKTLLGPELAASFGVSEDTLRHVVDAQHDAVILSSTWAAPGGPGGGRGKKEEDVLHVETKGIEDVVMDVFE* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1730 466 Gene3D Jelly Rolls 261 431 IPR014710 -
Tpr4g1730 466 Gene3D Jelly Rolls 22 221 IPR014710 -
Tpr4g1730 466 Pfam Cupin 269 413 IPR006045 -
Tpr4g1730 466 Pfam Cupin 41 139 IPR006045 -
Tpr4g1730 466 PANTHER OS03G0336100 PROTEIN 2 437 - -
Tpr4g1730 466 CDD cupin_7S_vicilin-like_N 41 199 - -
Tpr4g1730 466 SUPERFAMILY RmlC-like cupins 38 425 IPR011051 -
Tpr4g1730 466 CDD cupin_7S_vicilin-like_C 276 425 - -
Tpr4g1730 466 PANTHER OS03G0336100 PROTEIN-RELATED 2 437 - -
Tpr4g1730 466 SMART Cupin_1_3 30 185 IPR006045 -
Tpr4g1730 466 SMART Cupin_1_3 269 416 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1730 Tpr-Chr4 17849637 17852929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1730 69 459 Miscellaneous Gene Families AT4G36700 30.296 2.66e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1730 - - gmx:547942 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1730 4 17849637 17852929 Tpr4g1730 4 17849637 17852929 ECH
Tpr7g4353 7 52303021 52305617 Tpr4g1730 4 17849637 17852929 PCT