Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1688 ATGTACAAGAACCAGCTTCAAGAGCTAGCACAGAGAAGCTGTTTCAATCTTCCTTCGTACACGTGCCTTAGAGAAGGTCCTGATCACGCGCCGCGGTTTAAAGCTACCGTTAACTTTAATGGTGAGATCTTTGAGAGTCCTCAGTATTGTTCAACACTTCGTCAAGCTGAACATTCAGCTGCTGAGGTGGCACTTAGTTCACTCTCTCATCGTGGTCCTTCTCATTCTCTTGCTGCAAAAATCCTTGATGAGACGGGAGTGTACAAGAATCTCTTACAAGAAATTGCACAAAGGGTAGGGGCTCCGTTGCCGCAATACACAACTTTCCGGTCAGGCCTAGGACATCTACCTGTTTTTACTGGGACGGTAGAGTTAGCTGGAATTACATTTACCGGCGAACATGCTAAGAATAAGAAACAAGCAGAGAAAAATGCAGCTATGGCAGCTTGGTCGTCTCTAAAGCAATTGGCAAAAGAAACTGCAAGCTCTTCAACTGAACCGGAGAACAATGATGAACTAGAACAGATCACCATAGCACGGGCCTTACTGAACTACCGTCTGAAGGAAAAGATGGCAATGTCCAACCCTAATGCTATGATTCCATTTCCAATGAAGTTTCAGTTTCAAAATCCAAGGCCAACCAGTCCTCAACCTCGACCAGCAACATCAAAGATACTTCCCCTAATTTGCCAAAAGACAGCACATCGAAACAGGCACCCCGCAATGGCTTCGGCCAGCGGTGATCACAATTCCATTATGTCACCGCTTTCTTCTACACCAGAAAGCCGATGGGCCCGTCGCCCTAAATTCCCTGCAGCAGGAGCAGCGCCTTATGTGCCCATTCGACATATGCGATCATCTTGCCAGGGAGTTGCACCTCCAGTGACCATAAGGACTGCAATACCTGTATTCTCCCCGCCACCATCGGCAGTGTCCTCTCAAGTAATGCGGCCCCCTCCTATACGAGTTGCTCCTCCGATCAATATTCGGCAGGCAATTCCAGTGTATGCTGCTCCAGCCGTTCGAAAAGATGAACCTGTTCTCATCAGCAAAGACAAACCAGTACCAGTACCAGCACCAGCAGTATATGCTGTTCCATCGATTCGAGTAGACGAATCTGTTCCAAGCAGCAAAGGTGATCCCGCACCGGCAGAAAATGCTGCTCAAGTAGACGAACCTGTTCATATTTGCAAGGATGATCCAGCACCAGCAGTTTATGCTGCTGCAGCAGTTCGAAAAGACGGACCTGTTCCCATCAGCAAAGATGATCCAGTGCCCACTATTGGCGCCCCTGATCAGGAAGATAAAGTTGATACCAAAACTGAGAATATTCCAGCAGAATCTGCAAACATGCAGATGTTGGAGCAGCTGAAAATTTGA 1380 0.4761 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAAEVALSSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEHAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNDELEQITIARALLNYRLKEKMAMSNPNAMIPFPMKFQFQNPRPTSPQPRPATSKILPLICQKTAHRNRHPAMASASGDHNSIMSPLSSTPESRWARRPKFPAAGAAPYVPIRHMRSSCQGVAPPVTIRTAIPVFSPPPSAVSSQVMRPPPIRVAPPINIRQAIPVYAAPAVRKDEPVLISKDKPVPVPAPAVYAVPSIRVDESVPSSKGDPAPAENAAQVDEPVHICKDDPAPAVYAAAAVRKDGPVPISKDDPVPTIGAPDQEDKVDTKTENIPAESANMQMLEQLKI* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1688 459 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Tpr4g1688 459 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 458 - -
Tpr4g1688 459 MobiDBLite consensus disorder prediction 239 263 - -
Tpr4g1688 459 Gene3D - 84 155 - -
Tpr4g1688 459 MobiDBLite consensus disorder prediction 415 459 - -
Tpr4g1688 459 MobiDBLite consensus disorder prediction 247 261 - -
Tpr4g1688 459 PANTHER - 1 458 - -
Tpr4g1688 459 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
Tpr4g1688 459 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Tpr4g1688 459 Gene3D - 2 83 - -
Tpr4g1688 459 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Tpr4g1688 459 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Tpr4g1688 459 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Tpr4g1688 459 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Tpr4g1688 459 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Tpr4g1688 459 SMART DRBM_3 88 154 IPR014720 -
Tpr4g1688 459 SMART DRBM_3 2 69 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1688 Tpr-Chr4 17429183 17433471 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1688 - - gmx:100816445 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1688 4 17429183 17433471 Tpr4g1688 4 17429183 17433471 ECH
Tpr7g4386 7 52621487 52625797 Tpr4g1688 4 17429183 17433471 PCT