Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1616 ATGGTAGCCGCCGTTATTCTCTTCACCGTCACGGTTCTATCGGCGGCTGCTATTTCTTCATCTCATGTTACTCTAACACTTGAAAGAGCTTTTCCTTCTAATCATGGAGTTGAATTGAGTTACCTCAAAGCTTTGGATAGTTTCAGACATCAAAGATTTTTGCAGTCTACTAACTATGTTGTTGATTTTCCTGTTAAAGGATCCTTTGATACCTCAAAAGCAGGGCTTTACTTTACAAAGGTGAATTTAGGTACTCCTCCAAGAGAATTTTATGTGCAAATTGACACCGGTAGTGATGTTCTCTGGGTTAGTTGTGCATCCTGCAATGGTTGTCCCCAAACAAGTGGTCTCCAAATTCAGCTCAATTACTTTGACCCTCAGAGTTCATCGACATCTTCATTCATCTCTTGTTCTGACCAAAGGTGCAAGAATGGTGTACAGTCATCAGATAGCAGTTGTTCCGGTCGGAACAACCAATGCACTTACATATTCCAGTATGGAGATGGTAGTGGAACATCCGGCTATTATGTTTCAGACTTGATGCATTTTGCTAGTATTACTGAGGGATCTTTGTTGTCAAATTCCTCGGCACCTGTGGTTTTTGGTTGTAGCAACCAGCAGAGTGGGGACTTGACAAAGTCTGATAGAGCAATTGATGGCATATTTGGATTTGGGCAACAGGGTATGTCAGTAATTTCCCAGCTCTCTTCACAAGGAATAGCACCAAGAGTGTTCTCGCATTGCTTGAAAGGAGATAGTAACGGTGGCGGCTTATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAATTTATAGTCCACTCGTTCCGTCACAGCCACATTATAATCTAAATCTTCTGAGCATCTCTGTCAATGGCCAAAATTTGCCAATTGATTCTGCTATTTTTGCTACATCAAACAATAGAGGTACCATTATTGATTCCGGAACTACTTTGGCATACATTGCAGAAGAGGCTTACAATCCCTTTATCAATGCGATTACAGCTGCTATTCCACAATCTGTGCGCACTGTTCTTTCCAGAGGAAATCAGTGTTACCTAGTTACCACCAGCCTTGACGTCTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCCTCTCTCGTTTTAGGACCACAGGACTACCTTATAAAACAGAACTATATTGGAGATGGATCAGTGTGGTGTATTGGTTTTCAGAAAATTCCAGGTCAAGATGTAACAATTCTAGGAGACCTTGTATTGAAAGACAGAATTTTTGTCTATGATCTTGCTGGTCAACGCATTGGATGGGCAAACTATGACTGTTCATTATCGGTTAATGTTTCTGCTTCAACTGGTAACGGAAGAAGCGAGTTTGTCAACGCAGGAGACCTAAGTGGAAGCACTTCTTTACGCGATGGATCTCACAAATTGATAAACAGAAGTGGGATATTTGCTCTTTTCGTGCACATAACACTGATATGCTATTTTGTATTCTTGTAG 1482 0.413 MVAAVILFTVTVLSAAAISSSHVTLTLERAFPSNHGVELSYLKALDSFRHQRFLQSTNYVVDFPVKGSFDTSKAGLYFTKVNLGTPPREFYVQIDTGSDVLWVSCASCNGCPQTSGLQIQLNYFDPQSSSTSSFISCSDQRCKNGVQSSDSSCSGRNNQCTYIFQYGDGSGTSGYYVSDLMHFASITEGSLLSNSSAPVVFGCSNQQSGDLTKSDRAIDGIFGFGQQGMSVISQLSSQGIAPRVFSHCLKGDSNGGGLLVLGEIVEPNIIYSPLVPSQPHYNLNLLSISVNGQNLPIDSAIFATSNNRGTIIDSGTTLAYIAEEAYNPFINAITAAIPQSVRTVLSRGNQCYLVTTSLDVFPQVSLNFAGGASLVLGPQDYLIKQNYIGDGSVWCIGFQKIPGQDVTILGDLVLKDRIFVYDLAGQRIGWANYDCSLSVNVSASTGNGRSEFVNAGDLSGSTSLRDGSHKLINRSGIFALFVHITLICYFVFL* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1616 493 Pfam Xylanase inhibitor C-terminal 280 431 IPR032799 -
Tpr4g1616 493 PANTHER ASPARTYL PROTEASES 5 452 IPR001461 GO:0004190|GO:0006508
Tpr4g1616 493 ProSiteProfiles Peptidase family A1 domain profile. 77 431 IPR033121 -
Tpr4g1616 493 SUPERFAMILY Acid proteases 74 438 IPR021109 -
Tpr4g1616 493 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 452 - -
Tpr4g1616 493 Gene3D Acid Proteases 264 442 IPR021109 -
Tpr4g1616 493 Gene3D Acid Proteases 51 263 IPR021109 -
Tpr4g1616 493 CDD pepsin_A_like_plant 77 435 IPR034161 -
Tpr4g1616 493 Pfam Xylanase inhibitor N-terminal 77 262 IPR032861 -
Tpr4g1616 493 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Tpr4g1616 493 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
Tpr4g1616 493 PRINTS Pepsin (A1) aspartic protease family signature 407 422 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1616 Tpr-Chr4 16332739 16352006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1616 51 436 Miscellaneous Gene Families AT1G44130 27.654 4.86e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1616 - K00924 gmx:100789004 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1616 4 16332739 16352006 Tpr4g1616 4 16332739 16352006 ECH
Tpr7g3795 7 47010216 47015083 Tpr4g1616 4 16332739 16352006 PCT