Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1536 ATGAATTCTGGAACGATGGAAAACTTTCTAAAGGGAAAGACCATTTTGGTTACTGGCACAACAGGCTTCTTAGCAAAAGTTTTGGTGGAAAAGATATTACGGATTCAACCAGAGATAAAAAAGCTTTATCTTCTCGTAAGAGCTTCAAATACTGATTTGGCCTCTTATCGCTTGAAAAATGAGGTCTTTCAGAAAGATTTATTTCGAGTGCTACGAGAGAAGTTGGGTGAAGATTTTAATTCTTTTATATCAAAGAAGGTTGAGGTAGTAGCAGGAGATGTTGCTGTTGAAAATTTCGGAATAAAAGACAATAACATTAAAAATGCAATGTTTGAAGAGATAGACCTTATTGTCAATTCTGCTGCAACTACCAATTTTGATGAAAGATTTGACAACTCCATGGGTGTGAATACAATGGGCGCTTTACATGTCTTAAACATTGCAAAAAAATGTCACAAAGTAAAGCTTCTCGTCCACATATCAACGGCTTATGTGTGTGGCAAGACCGAGGAAGGAGAATCAAATTTTCAAGAGAAACCTTTTGAGATGAATCAATCCCTAAAGGGGACTTCACAACTAGATATACACACAGAAATGAATTTGTTGGAGAAAAAATTAGATGAACTTCGAGGAATGAAGGTGGATGAAAACAAAATCAAACATGTTATGAAAGATTATGGAATTGAAAGAGCAAATTTGCATGGTTGGCCAAACACATATGTATTCACAAAAGCAATGGGAGAGATGCTTTTAGTGCATCATAAAGATAATGTACCATTGATCATTATACGTCCTACAATGGTAACAAGTACAAGCAAGGATCCCTTTTCTGGTTGGATTGAAGGTCAAAGAACTGTTGATGGTATGATATGTGCTTTTGGTAAAGGGAAACTGCCATGTTTTCTCGGTAATCCAAACACAATTTTAGACATAATGCCTGTAGATTTGGTCATCAATTGTGTGATCGCAGCCATTGTTATTAATTCAAATCAAGCTCCTGAAAGTTTCATCTACCATGTTTCTTCTTCACTAAGAAATCCTTTCAAAATTTCTGATGTTCACAACATTTCGCATCAATATTTCGTGAAAACTCCTTGCTTAAACAAAAATGGAAAGCCAATAGTCATCTCAAAGGGAATTGCTTTGAAAAGTGTGGCTGCTTTCAACATTTATACAGAAGCCCGATATATCCTGCCACTTAAGGTCTTAAATTTGGTGAACAAAGTGATTTGCAATTATTCCTTCCAAGATGTTTATGATGACAACTACAAGAAAATAAGAACGGTGAAGCGACTTGCAAAATTATACGAACCTTACGTGTTTTTTAAGGCAATTTTTGATGATACAAACACGGAAAATTTACGGAGGGCAACAAAGAGCTATAACATGGAGAATGAGATACTAGAATTTGACCCTACTCGCATTAATTGGACAGACTACATGATGAATACACACATTCCTGGTCTGGTGAAGTATACAATGAAATAA 1488 0.3555 MNSGTMENFLKGKTILVTGTTGFLAKVLVEKILRIQPEIKKLYLLVRASNTDLASYRLKNEVFQKDLFRVLREKLGEDFNSFISKKVEVVAGDVAVENFGIKDNNIKNAMFEEIDLIVNSAATTNFDERFDNSMGVNTMGALHVLNIAKKCHKVKLLVHISTAYVCGKTEEGESNFQEKPFEMNQSLKGTSQLDIHTEMNLLEKKLDELRGMKVDENKIKHVMKDYGIERANLHGWPNTYVFTKAMGEMLLVHHKDNVPLIIIRPTMVTSTSKDPFSGWIEGQRTVDGMICAFGKGKLPCFLGNPNTILDIMPVDLVINCVIAAIVINSNQAPESFIYHVSSSLRNPFKISDVHNISHQYFVKTPCLNKNGKPIVISKGIALKSVAAFNIYTEARYILPLKVLNLVNKVICNYSFQDVYDDNYKKIRTVKRLAKLYEPYVFFKAIFDDTNTENLRRATKSYNMENEILEFDPTRINWTDYMMNTHIPGLVKYTMK* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1536 495 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 330 IPR036291 -
Tpr4g1536 495 Pfam Male sterility protein 395 495 IPR033640 -
Tpr4g1536 495 Pfam Male sterility protein 17 320 IPR013120 -
Tpr4g1536 495 CDD FAR-N_SDR_e 13 365 - -
Tpr4g1536 495 PANTHER MALE STERILITY PROTEIN 2-RELATED 7 492 IPR026055 GO:0080019
Tpr4g1536 495 Gene3D - 5 375 - -
Tpr4g1536 495 CDD FAR_C 395 494 IPR033640 -
Tpr4g1536 495 PANTHER FATTY ACYL-COA REDUCTASE 7 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1536 Tpr-Chr4 15140676 15146476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1536 8 402 Acyl Lipid Metabolism Gene Families AT5G22500 51.010 2.23e-150 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1536 K13356 - pop:7474947 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1536 4 15140676 15146476 Tpr4g1536 4 15140676 15146476 ECH
Tpr7g3836 7 47622548 47631312 Tpr4g1536 4 15140676 15146476 PCT