Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0574 ATGTCTAAAACAGATAAAACACAAACCAATTGTTCCACTACTTTACTTGAGCTACTTACAGAAATGAAGAACCTATCCTACACAGACCAATCCAATTTCCAACCAAAATCACCATCAAATTTCTCCTCCGAATGCTGGTTCGATGACGCATGTATCCTAGACATGGATTACTTTGTGAAAACACTTTCTGGAATCAAAGCAAAAGGCGTTCGAGCTGATTTAATCGGTTCCATTATCACACACTATGCATCCAAATGGCTACCTGACATAGCTGATCAAAAGGGTCTAACACAATTTGAAGAATCGTCACCTGAGAGTGTAACAGCTTCATGGATGAAGAAAAGGTTCTTTGTAGAAACCTTAGTTAATGTTCTACCACCAGAAAAAGATTCAATTCCATGTAACTTTCTTCTTAGGCTATTGAGAACTGCTAACATGGTTGGTGTTGATGGAAGTTATAGACAAGAGCTTGAGAAGAGAATTTCATGGCAATTAGATCAAGCTTGTTTGAAAGAACTTGTTATTCCATCTTTTAGTCATACTTGTGGGACACTTTTGGATTTTGAGCTTGTTATTAGGCTTGTTAAGAGGTTTGTTAGTTTGGATAATGAAGGTGCTAAAAGTGGTGCTGCTTTGGTTAAAGTTGCTAAGTTGGTTGATTCTTATCTTGCTGAAGCTGCTGTTGATGCTAATTTGAGTTTGGATGAGTTTGTTACTCTTGCTGCTGCTCTTCCAAGTCATGCTAGAGCTACTGATGATGGTTTGTATAGAGCCATTGATACTTACCTAAAAGCACATCCAAGTGTATCAAAGCAAGAAAGAAAAGGTCTATGCAGGCTAATAGATTGCAGGAAACTAACACAAGAGGCATCACTTCATGCAGCACAAAACGAACGATTCCCGGTAAGAGCAGTAATTCAAGTCCTTCTCTCAGAACAAACAAAGCTCAACAGACACAACAACAATCATAACATGGATTGGAGTGGATCCATAATGAGCATAACAAGAAGTCCAACAAATGGGTTTGGACTCGAAGCAGCTCCAACAGCAAGGTGTTTATCAAAGCGCGAAATGAATGCTCAACAGATTGAGATAAAGAAATTGAGGGAAGATGTTCATAGGCTGCAAAGTCAGTGTAATGCAATGCAAGTTCAGATGGAGAGAATGGTTGAAAAGAAGAAAGGGTTTTTTAAGTGGAGTAAGAGGTTTGGTGTGCATGGTTTTGGTAAAGGAGATTGTGCTGTTGAGAGAAGAGGTGAAGGTGTTGATGGTGATGCTCAGATTGAGTTTGGTAGACAGACACCAGCTGCTACTTCTGATATGAAAACTAGGTTGGTGAATGTTAAAGGAAATTAA 1356 0.3894 MSKTDKTQTNCSTTLLELLTEMKNLSYTDQSNFQPKSPSNFSSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDIADQKGLTQFEESSPESVTASWMKKRFFVETLVNVLPPEKDSIPCNFLLRLLRTANMVGVDGSYRQELEKRISWQLDQACLKELVIPSFSHTCGTLLDFELVIRLVKRFVSLDNEGAKSGAALVKVAKLVDSYLAEAAVDANLSLDEFVTLAAALPSHARATDDGLYRAIDTYLKAHPSVSKQERKGLCRLIDCRKLTQEASLHAAQNERFPVRAVIQVLLSEQTKLNRHNNNHNMDWSGSIMSITRSPTNGFGLEAAPTARCLSKREMNAQQIEIKKLREDVHRLQSQCNAMQVQMERMVEKKKGFFKWSKRFGVHGFGKGDCAVERRGEGVDGDAQIEFGRQTPAATSDMKTRLVNVKGN* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0574 451 Pfam NPH3 family 45 291 IPR027356 -
Tpr4g0574 451 PANTHER OS12G0117600 PROTEIN 1 450 IPR043454 -
Tpr4g0574 451 Coils Coil 358 392 - -
Tpr4g0574 451 ProSiteProfiles NPH3 domain profile. 44 315 IPR027356 -
Tpr4g0574 451 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 1 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0574 Tpr-Chr4 5386369 5389137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0574 43 316 EF-hand Containing Proteins AT3G44820 37.171 9.62e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0574 - - cam:101500573 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0574 4 5386369 5389137 Tpr4g0574 4 5386369 5389137 ECH
Tpr7g4965 7 57443323 57445811 Tpr4g0574 4 5386369 5389137 PCT