LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g0567	ATGTTGCGAAGACTCATCTCTTCACAACTCAAAACCCTAACTTCTTCTTCTTCTTCACTCCGATCTCCTTCCCCCGCCATCGCTGTTTCTCTATTCTCCCGCCAATTCACTGCTCAATCCGATGGCGGTAGTGCAATCAAAAAGAAGGTTGAGGATGTAATGCCAATTGCTACCGGTCACGAGCGCGAGGAGATTCAGGCTGACCTTGAGGGTAGGAATATTCTTGAAATCGACCATCCTGAAGGTCCTTTCGGAACCAAGGAAGCACCTGCTGTTGTCAAATCCTACTATGATAAAAGGATAGTTGGATGCCCAGGTGGTGAAGGCGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAACCTCACGAATGTCCCGTGTGCGCACAGTATTTTGTGCTCGAAGTGGTAGGACCTGGTGGACCACCTTATGGACACGGCGACAATCATCATCACTAA	468	0.485	MLRRLISSQLKTLTSSSSSLRSPSPAIAVSLFSRQFTAQSDGGSAIKKKVEDVMPIATGHEREEIQADLEGRNILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKDKPHECPVCAQYFVLEVVGPGGPPYGHGDNHHH*	156

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g0567	155	Pfam	Cytochrome c oxidase subunit Vb	55	142	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Tpr4g0567	155	PANTHER	CYTOCHROME C OXIDASE SUBUNIT 5B	1	155	-	-
	Tpr4g0567	155	SUPERFAMILY	Rubredoxin-like	46	143	-	-
	Tpr4g0567	155	ProSiteProfiles	Cytochrome c oxidase subunit Vb, zinc binding domain profile.	45	144	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Tpr4g0567	155	Gene3D	Cytochrome c oxidase, subunit Vb	46	140	IPR036972	GO:0005740\|GO:0005751\|GO:0006123
	Tpr4g0567	155	CDD	Cyt_c_Oxidase_Vb	45	140	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Tpr4g0567	155	PANTHER	CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL	1	155	IPR002124	GO:0005740\|GO:0005751\|GO:0006123

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr4g0567	Tpr-Chr4	5296381	5302136	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g0567	K02265		-	gmx:100780886	222.631

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr4g0567	4	5296381	5302136	Tpr7g4972	7	57506365	57510131	ECH
	Tpr4g0567	4	5296381	5302136	Tpr4g0567	4	5296381	5302136	ECH
	Tpr7g4972	7	57506365	57510131	Tpr4g0567	4	5296381	5302136	PCT