Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0522 ATGGAGTTTGAAACTTGTATTATTACTACTCCTATTAATAACAATGAGAAACCTGATTCAGGAACACAACCCAATAATCAGAAGAGAAAGAGGTCTATCGTGTGGGAATACTTTACGGTGGAAACTGTTGGAGCTGGATCTGCCGAGGCTTACTGTAAACAGTGCAAAAAATCATTTTCTTATATGACTGATTCAAAAGTATCTGGCACAAGTAATTTGAAGAGGCACATTTCTTTGGGAACCTGTCAAGCAATGGAACAGAAAAGTCAATTTAACTCGCATCCTGAAAATGGTGGTTTGCAGGATAATGCCATTCCATCAAAGAAAAGACCAAGAGACAGACCTACATACGCTGGTAATGATGTCTCATTTGATCAGGAGCGTTGCAACTATGACATTGCTAAAATGATAATTTTACATGATTATCCTCTTGATATTGTGAAACACCAGGGCTTCATTGCTTTTGCACAGACTCTTCGTCCCCAGTTCAACCCGTTGTGTTTGGATTCTGTTGAAGGGTACTGTGTTTCTATGTATCACAAAGAGAAGCAGTATCTGTTAGATCTTATTAATGGGATTCCTGGACGACTCAACCTGACATTGGACTTGTGGACTTCAAACCAGGGAATAGGGTATGTTTTTATCCGAGGACACTTTATTGATAGTGATGGCAACATACATCATCCTATTCTCAATGTTGTTACAGTACCGTCTCCTGATTCAGGTGATTCCCTAAATCAAACCATAATGACCTGCATATCTGATTGGCATTTGGAGGGTCGGGTGCTTACCCTTGCACTTGATAAATCTTTAACGAGCGAGACTGTAAAGGTAAATTTACGAGGCAATCTATCTGTTAATAACCCTGTGATTCTCGATGGTCAGTTATTAAACCAGAATTGTTATGCCCGTGTTCTCAGTCGCCTTGCAATAGATGCACTACGGCAAATGAGCAAAACTATTAGCAAAGTTCGTGAATGTGTGAAATTTGTGAAATATTCTGAATCTCATGAAGATAAGTTTGTTGAGCTTAAGCAACAACTACAAGTACCTAGTTCGGCAAACCTTTTAATAGATGATCATTATAAATGGGATTCAACATTCCATATGCTTGTAGCTGCCTGTGAATTAAGGGAAGTTTTTACTTGCTTTGATACCACTTGTCCTGATTTCACAATGACTCTGACTATAGATGACTGGAAGCTGGTTGAGACTCTCTGCACATATTTGAAGTATTTGTATGATGCAGCTCATATGCTAACAACCCGACCATACCCAACTGCAAATTTATTTTTTCTTGAAGTGTCAAAACTTCATATGGAGTTGACTAATGCAGCCTTAAGCCAGGATCCTTTTCTTAGTAGTTTGATTTTGCCTTTGCTCACGAACTTTGATCAATATTGGAGAGAGAGTTGCCTAATCTTGGCAGTTGCTGTGGCCATGGATCCAAGGCATAAAATGAAACTTGTGGAATCCATTTTTGCTAAGATATTTGGGGAGAATGCTAAGCAATGGATAACAATAGTTGAAAATGGCCTTCATGAACTATTCATTGAATATAACACTGAAATGCTTCATTTTACTACAATAGATGCCGATGAAGGGGATGATATTATGTTAAAGACACAGCCATATGAAGGACCGGTTGATGGTTCTCTTTTTGTCGATGAAGGTGGACTTTCTGACTTTGAGTTTAGTATATCTGATTGTATGCAGCAATTCAAGTCAGAAATGGACGAGTATTTGGAAGAACCTTTGGTGTCGGAAGTCAAAGAATTTGATATTCTGAATTGGTGGAGGGACAATCGAACGAAGTATCCAACATTGTCTAGAACTGCATCTGATATTTTGTCTATGTCAATATCCACTGTGTCTGCAGATTCTGTTTTTGACACAGAAATTAGAAAAATGGATGACTACCGGAATTCATTAGACTCTCGTACTCTTGAAGCTCTTATTTGTGCCAAGGATTGGTTCCAGCATAAGTCTATACCCAAAAACGGTTCAAGTACACTTGAGAAAATGAAAGTTCAGACATAG 2040 0.3843 MEFETCIITTPINNNEKPDSGTQPNNQKRKRSIVWEYFTVETVGAGSAEAYCKQCKKSFSYMTDSKVSGTSNLKRHISLGTCQAMEQKSQFNSHPENGGLQDNAIPSKKRPRDRPTYAGNDVSFDQERCNYDIAKMIILHDYPLDIVKHQGFIAFAQTLRPQFNPLCLDSVEGYCVSMYHKEKQYLLDLINGIPGRLNLTLDLWTSNQGIGYVFIRGHFIDSDGNIHHPILNVVTVPSPDSGDSLNQTIMTCISDWHLEGRVLTLALDKSLTSETVKVNLRGNLSVNNPVILDGQLLNQNCYARVLSRLAIDALRQMSKTISKVRECVKFVKYSESHEDKFVELKQQLQVPSSANLLIDDHYKWDSTFHMLVAACELREVFTCFDTTCPDFTMTLTIDDWKLVETLCTYLKYLYDAAHMLTTRPYPTANLFFLEVSKLHMELTNAALSQDPFLSSLILPLLTNFDQYWRESCLILAVAVAMDPRHKMKLVESIFAKIFGENAKQWITIVENGLHELFIEYNTEMLHFTTIDADEGDDIMLKTQPYEGPVDGSLFVDEGGLSDFEFSISDCMQQFKSEMDEYLEEPLVSEVKEFDILNWWRDNRTKYPTLSRTASDILSMSISTVSADSVFDTEIRKMDDYRNSLDSRTLEALICAKDWFQHKSIPKNGSSTLEKMKVQT* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0522 679 Pfam hAT family C-terminal dimerisation region 577 659 IPR008906 GO:0046983
Tpr4g0522 679 MobiDBLite consensus disorder prediction 9 28 - -
Tpr4g0522 679 MobiDBLite consensus disorder prediction 88 121 - -
Tpr4g0522 679 Pfam Domain of unknown function (DUF4413) 422 520 IPR025525 GO:0003677
Tpr4g0522 679 SUPERFAMILY Ribonuclease H-like 191 660 IPR012337 -
Tpr4g0522 679 ProSiteProfiles Zinc finger BED-type profile. 29 89 IPR003656 GO:0003677
Tpr4g0522 679 SMART bed5 29 85 - -
Tpr4g0522 679 PANTHER BED FINGER-RELATED 17 666 IPR045259 -
Tpr4g0522 679 SUPERFAMILY beta-beta-alpha zinc fingers 32 80 IPR036236 -
Tpr4g0522 679 Pfam BED zinc finger 34 77 IPR003656 GO:0003677
Tpr4g0522 679 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1 17 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0522 Tpr-Chr4 4966500 4970407 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0522 - - gmx:106799409 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0522 4 4966500 4970407 Tpr4g0522 4 4966500 4970407 ECH
Tpr7g5026 7 57866945 57870370 Tpr4g0522 4 4966500 4970407 PCT