Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0148 ATGGAATCTCCACAATCCATTGTGTCAGTGTCACCATTCAAGAGCTCAGTCTTTGGAGATTCTGAGAAGTATAAGTCAGATATGTTGACACAAAGGTCTAGTCCTTTGTCTAAGGGCATTGAAATCAATGGAAAAGAAGCTTTTGCAGTGTCGAATCATGAGGAATTTATTGGAGTAGTTGATGTTTGCATACATCAAGCTAGAGACATTCATAACATCTGCATATACCATAAGCAAGATGTTTATGCTAAGATATTTTTGACTAATGATCCTGAGAGTTCTGTCTCTACCAAGATTATCAATGGAGGAGGAAGGAACCCCGTGTTTAACGATAACCTTCGTTTAAGCGTTAGGACTGTCGATTCTTCTCTCAAATGTGAGATTTGGATGATGAGTAGGGTCAAGAATTATCTTGAAGACCAATTGCTTGGTTTTGCTTTAGTACCTTTGTCTGAAGTATTGATGAAAGATGGAAAACTAGAGAAAGAGTTCTCTCTTTCTTCAACCGATCTATTCCATTCCCCGGCAGGTTTCGTTCAATTGTCTGTTGCTTACAACGGTGCTTCGCCCGATGTTATGGAAATTTCGGCAATGCCTAATGCTGAATTGGATCGAAATGGCATTCAGAAGGACTCGGAAACATGTGAGTCGATCGTGAGAGATTTAGGTAAAATCGAGTTCCCGGATCCGAAAATTGTAAATGAAGATCATATAATGGTTTCAGAATACTTTGGCACTGATAGCTTGGCCACTACTGATACTGAAAATCTTAGTTCTGAAAAAGGTGTTCAATTTGTGGAAAGCTTCTCGGCGGCATGTAGTGCTGAATCTGTTGAACCTCCGAAAGTTGAATCGCCGCCTAGCAGTGTGTCAACAAATGGTGTTGTTTCAAGCACAATTTCAAGCACGAAAGAGAAAACTGTTGATCTCAAAGATGGCGAGAGTGATTCATCGAACGCGTTGCTGAATGAGGCATTTCAAAAGCCTGTTGTGAGTGTGAATATTGAGCCAGAGCCAAAAATGGTGCAGCAGGATATAGTAGACATGTATATGAAAAGTATGCAGCAATTTACTGAGTCATTAGCAAAAATGAAGCTTCCTATGGACTTTGAAAGTGGACCAACTAGTTCAGGAAACACAATCTCGGAACCGAAACTACAGTCGTCAAAGAGTAGTAACTCGCGTGTGTTTTATGGTAGTAGAGCTTTCTTCTGA 1215 0.4025 MESPQSIVSVSPFKSSVFGDSEKYKSDMLTQRSSPLSKGIEINGKEAFAVSNHEEFIGVVDVCIHQARDIHNICIYHKQDVYAKIFLTNDPESSVSTKIINGGGRNPVFNDNLRLSVRTVDSSLKCEIWMMSRVKNYLEDQLLGFALVPLSEVLMKDGKLEKEFSLSSTDLFHSPAGFVQLSVAYNGASPDVMEISAMPNAELDRNGIQKDSETCESIVRDLGKIEFPDPKIVNEDHIMVSEYFGTDSLATTDTENLSSEKGVQFVESFSAACSAESVEPPKVESPPSSVSTNGVVSSTISSTKEKTVDLKDGESDSSNALLNEAFQKPVVSVNIEPEPKMVQQDIVDMYMKSMQQFTESLAKMKLPMDFESGPTSSGNTISEPKLQSSKSSNSRVFYGSRAFF* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0148 404 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 56 187 IPR035892 -
Tpr4g0148 404 Gene3D C2 domain 52 213 IPR035892 -
Tpr4g0148 404 PANTHER EXPRESSED PROTEIN 1 404 - -
Tpr4g0148 404 MobiDBLite consensus disorder prediction 284 304 - -
Tpr4g0148 404 SMART C2_3c 59 162 IPR000008 -
Tpr4g0148 404 MobiDBLite consensus disorder prediction 277 314 - -
Tpr4g0148 404 ProSiteProfiles C2 domain profile. 44 164 IPR000008 -
Tpr4g0148 404 Pfam C2 domain 59 164 IPR000008 -
Tpr4g0148 404 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 404 - -
Tpr4g0148 404 MobiDBLite consensus disorder prediction 372 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0148 Tpr-Chr4 1672224 1675192 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0148 - - gmx:100781587 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0148 4 1672224 1675192 Tpr4g0148 4 1672224 1675192 ECH
Tpr3g4055 3 45110249 45112975 Tpr4g0148 4 1672224 1675192 PCT