Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4055 ATGGATTCTCCACAATCTGTTGTGTCACCCTTCAGAACCTCAATCTTGGGTGAAGGTGAGAAGCACAGGTCTGATGCTTTAACACAAAGCAATGGTCCTTCCTCTAAGGACATTGAGGTCAATGGAAAGGAAACTATCATGTCAAATGCCGAGGAATGCGTTGGAGTGCTTGACGTTTACATACATCAGGCTAGAGACATTCAGAACATTTGCATATACCACAAGCAAGATGTTTATGCTAAGATTTGCCTGACAAGTAATCCTGAGAACACTGTATCTACCAAGACTATCAATGGAGGAGGAAGGAACCCTGTGTTTAATGACAATCTTCGTATCAATGTTTGGGATGTTGATTCTTCTCTCAAATGTGAGATATGGATGCTTAGCAGGGTGAAGAATTATCTTGAAGATCAGTTGCTCGGTTTTGCTTTAGTACCGTTGTCGGAAGTACTAGTTCAGAATGGGAAACTAGAGAAAGAGTTTTCTCTTTCAACGCTTTCTTCAAATGATCTGTTTCATTCTCCTTCAGGTTTTGTTCAGTTGTCAATTGCTTATACCGGTGCTACACCTGATGTTATGGCAATATCTGAAATGCCGAGGAAAGTGGCGAATCATCTGACTGTGCAGGACTCGGAAACATCTGAGTCGTTGGCCAGAGATTTGGATAAAATTGAGTTTCCAGATCCTAAGATTGTAAATGAAGACCACTTAATGGTTTCAGAATACTTTGGCATTTCGTGTGAGGAGACTCAGTGCTCTGATAGCTTGGCCACTTCTGATGCTGATGATCATAGTTCTGAAGCAGGTGTTCGGCTTGTGGAAAGCTTCTCGGCATGCAGTGAAGAGTCTGTGCAAGTGCAACCTCCTAAGGTTGATTCTCCACCGAGCAGTGTGTCAACAAATGGAGTTTCTTCTCCTGCACCTGAAAGCTCAGAATCATCTGATGCTGCTGCAGCTTCTAAGTACCCTGGTCACGAACAAGTTTCAGGCACCGAGCAACCAAAAAAAGTGGATGTCAAAGATGGTGAGAGTGATTCTTCAAGTGTTGTTCCGAGTGATTTATTCCCTAAGCCTGTTGTGACTGTGAACATCGAGCCAGAGCCGCAGATGGTGCAGCAGGATATAGTTGACATGTACATGAAAAGTATGCAACAATTTACCGAGTCATTGGCAAAAATGAAACTTCCTAATATGGACATTGAAAGGGAACCTACTAGTTCTGGAAATTCAAGTACTGAGCAGAAGCTACCACCATCTAACAATGGTACCTCCCGTGTCTATTATGGGAGCAGAGCTTTCTTTTGA 1305 0.4284 MDSPQSVVSPFRTSILGEGEKHRSDALTQSNGPSSKDIEVNGKETIMSNAEECVGVLDVYIHQARDIQNICIYHKQDVYAKICLTSNPENTVSTKTINGGGRNPVFNDNLRINVWDVDSSLKCEIWMLSRVKNYLEDQLLGFALVPLSEVLVQNGKLEKEFSLSTLSSNDLFHSPSGFVQLSIAYTGATPDVMAISEMPRKVANHLTVQDSETSESLARDLDKIEFPDPKIVNEDHLMVSEYFGISCEETQCSDSLATSDADDHSSEAGVRLVESFSACSEESVQVQPPKVDSPPSSVSTNGVSSPAPESSESSDAAAASKYPGHEQVSGTEQPKKVDVKDGESDSSSVVPSDLFPKPVVTVNIEPEPQMVQQDIVDMYMKSMQQFTESLAKMKLPNMDIEREPTSSGNSSTEQKLPPSNNGTSRVYYGSRAFF* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4055 434 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 434 - -
Tpr3g4055 434 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 187 IPR035892 -
Tpr3g4055 434 CDD C2 57 163 - -
Tpr3g4055 434 ProSiteProfiles C2 domain profile. 42 161 IPR000008 -
Tpr3g4055 434 Pfam C2 domain 55 162 IPR000008 -
Tpr3g4055 434 PANTHER EXPRESSED PROTEIN 1 434 - -
Tpr3g4055 434 SMART C2_3c 56 159 IPR000008 -
Tpr3g4055 434 MobiDBLite consensus disorder prediction 400 434 - -
Tpr3g4055 434 Gene3D C2 domain 50 216 IPR035892 -
Tpr3g4055 434 MobiDBLite consensus disorder prediction 281 354 - -
Tpr3g4055 434 MobiDBLite consensus disorder prediction 281 317 - -
Tpr3g4055 434 MobiDBLite consensus disorder prediction 1 39 - -
Tpr3g4055 434 MobiDBLite consensus disorder prediction 402 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4055 Tpr-Chr3 45110249 45112975 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4055 - - gmx:100804602 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4055 3 45110249 45112975 Tpr4g0148 4 1672224 1675192 PCT