Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0110 ATGTCACATAAATATTTTTTCATTCTTTTGTCTCTCTTATTAATCTCAAGATTCTCAACCAGTGTTTTTGTCGAAGATAGTTTCATCTCTGTGATTATATCTGATAAGGGTCTTGACTTTGTCAAAGATATTCTAATAAACCAAACTATTGAATCTATAGTTCTTTCTCAGCTACCACAAATTGAGAAATCTGTTCAAGTCCCTCTTGTTGGAAAAGCTAATGTGATTCTTTCTGAGATAACAATCAAAGATATTCAAGTGAGTTCTTCATATATTGAAATTGGTGATACTGGTATTGCTGTTGTTGTTTCTGGTGCTACTGCTGATTTGAGCTTGAATTGGAGATATACAGTTAGTAGTTGGTTAGTTCCAATTGGAATTTCAGATAGTGGAACTGCCACTGTTAAGGTCGAAGATCTGCAAGTCGGACTTACTGTAAATTTAACGAACCAAGAAGGAACTCTTAAGCTGATTCTCTTAGATTATGGATGTGATGTTGGCGAATTATCTATAAAAGTGAACGGTGGTGCAGCGTGGCTTTATCAAGTGCTAGTTGATGCTTTTAAAGGAAATATAGGATCTGCAGTCGAAGATACGGTTTCTAAGAAAATAAGTGAAGGGATACCAACACTTGACGATTTACTGCAAACTCTTCCGAAGGCAATTTTATTAGATGAAACTGCTGTTTTGAATGTTTCTTTCGTAGGCAATCCTGTGCTGAGTAATTCTTCTATTGAACTTGGAATCAACGGTTTATTCACCGAGAGAAATGATGATTTAGTACCTCAAGTTTACCACAGAGGATATGATAACATTTCTGTTTCTAGTGGTGATTTACCAAAGATGATAAAAATTTCTTTACATGAAAATGTTTTCAAATCGGCCTCCGAAGTTTACTTTGCAGCAGATGCGTTGCAATGGATACTTGATGAACTACCTAATCAGGCTTTTTTAAACACAGCTGACTGGAAAATCATCATTCCTCAATTATACAAGCAATATCCAAATGATGAGATGAATCTTAATATCTCTATATCTTCTCCACCGGTTATAGAAGTCTCAGATCAAGATATCTATGCTACCATTTCTGTAGATTTAATCATCGATGTTCTGGAAGCCGATGAAGTCATACCTGTTGCATGCATCTCTGTTGACATTAGTGCTTCGTGTGACGCAGAAATTGTACGAAACAGTCTTACAGGTCGGCTTAAATTGAAGAAGTTCTCGACACACTTGAAATGGAGCAAAATAGGGAAACTTCACATGAATGTAATTCAGTCAACGTCATCAACTGTCCTCAAAACCGTCATCATACCGTACCTAAACTCGCAGTTAAAGAGAGGAATTCCATTGCCAATTCTCAATGGTTTCGCCCTTAAGAATGCGCGTATCTTGTACACTCCTCCATGGATTGCAGTATCTAGTGATGTTACCTTCTTAGGAGACTACTATCTTAAACATCATCTAGCTTATGGTAAAAAAGGAGTGTACTATACTTATAAAGATAGCTGGGAAGAGTGA 1521 0.3649 MSHKYFFILLSLLLISRFSTSVFVEDSFISVIISDKGLDFVKDILINQTIESIVLSQLPQIEKSVQVPLVGKANVILSEITIKDIQVSSSYIEIGDTGIAVVVSGATADLSLNWRYTVSSWLVPIGISDSGTATVKVEDLQVGLTVNLTNQEGTLKLILLDYGCDVGELSIKVNGGAAWLYQVLVDAFKGNIGSAVEDTVSKKISEGIPTLDDLLQTLPKAILLDETAVLNVSFVGNPVLSNSSIELGINGLFTERNDDLVPQVYHRGYDNISVSSGDLPKMIKISLHENVFKSASEVYFAADALQWILDELPNQAFLNTADWKIIIPQLYKQYPNDEMNLNISISSPPVIEVSDQDIYATISVDLIIDVLEADEVIPVACISVDISASCDAEIVRNSLTGRLKLKKFSTHLKWSKIGKLHMNVIQSTSSTVLKTVIIPYLNSQLKRGIPLPILNGFALKNARILYTPPWIAVSSDVTFLGDYYLKHHLAYGKKGVYYTYKDSWEE* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0110 506 Pfam LBP / BPI / CETP family, C-terminal domain 281 477 IPR001124 GO:0008289
Tpr4g0110 506 Gene3D - 30 464 - -
Tpr4g0110 506 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 30 242 IPR017943 GO:0008289
Tpr4g0110 506 SMART bpi2_2 277 475 IPR001124 GO:0008289
Tpr4g0110 506 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 2 491 - -
Tpr4g0110 506 PANTHER OS06G0309200 PROTEIN 2 491 IPR045897 -
Tpr4g0110 506 SMART bpi1_3 33 258 IPR017942 GO:0008289
Tpr4g0110 506 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 243 478 IPR017943 GO:0008289
Tpr4g0110 506 Gene3D - 36 216 - -
Tpr4g0110 506 Pfam LBP / BPI / CETP family, N-terminal domain 37 208 IPR017942 GO:0008289
Tpr4g0110 506 PIRSF Lipid_binding_protein 6 483 IPR030675 GO:0005615|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0110 Tpr-Chr4 1341451 1344831 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0110 K05399 - gmx:100804747 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0110 4 1341451 1344831 Tpr4g0110 4 1341451 1344831 ECH
Tpr3g4096 3 45479451 45484389 Tpr4g0110 4 1341451 1344831 PCT