Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0098 ATGAAAAAGTTCTTCGAGAAACAACTGATGAATATAACAATAGGAATAGCTAAACTTTTGGACATGGAATCGGATGTCGAAGAAGAAAAGGAGAATCTGATTTCATTAAGAGATCGTTTGCTTGTAGCAGTTGAAGCAACTGATGATTATAAAACTAAAAATATCAACGATGAAGTGTTTGTGTGGCTAAATGAAACAGAGATACTCATACAAGAGGCGGAGAAACTTACGGCTCAAACAGAAACACCACAACAAAAGAAAGAATGTAAGAAATTGCTGAGAAAATTATTGGCACACCAGTTTAACTTTTCTGGGTTTTACCCAGTAATTTTTGAGTCCTTCTCTAATGGAAATATTCATGGGTCACAATTTGTATGTTTTAATTCTAGAGAGAAGGCATCGAGTCAACTTTTAGTGGCACTGCAAGTTCATAAGTGCTCTTTGATTGGATTGTATGGTAGGTCAGGCTCAGGTAAAACAACATTGGTGAAAGCAGTCAGTGAAAAACTTAAGGATATATGTGGCCTTAAGGTTTTATTTGTTAAGGTGACCGAAAATTCAAATATCAGAACAATGCAAGATGAAATTGCTGACTCGTTGAATATTAAATTTGATAAAAACAGTGAAGCTGGAAGAGCCAGAATAATATTCTCAACAATAGAACGTATGTATAAAATTCTAGTGATTTTCGATGATGTTCCAGCAAAATTCAACCCTGAGGATGTAGGCATTCCTTGTAATAGTGAACACTGTAAGATCCTTTTGACCACATGTTGCCAACAAGGTAGCGACTTTATGTATTGTCAATGCGATATTCAACTTGGTCCGTTATCTACAGAGGAATCTTGGACTTTGTTCCAAAAACATTCAGGTATTGACGATCAGGAGTACTCCTCCTCATATGACTTATCGAATGTGGCACGCGAAGTTGCTTTTGAATGTGAAGGGTTACCCGGAAAAATTAAAGATGTGGGATGTTCCTTAAAAAGTAAACCAATTGAAGAATGGAAAGCAACACTAGATAGTCTGAAACATTCGATGGGCAAATGGCAAATTTTCCTCAGTTTTAGAGGAGATGATACACGCTACGGTTTTACAGGGAATCTTTATAAAGATTTATGTCAAGGGGGATTCAAGACCTTCATGGATGATGGAGGACTACAAACCGGAGACCAAATCTCACCCTCTCTTCTAAATGCAATTGAAGCATCAAGACTTTCAATTATTGTTTTATCTGAAAACTATGCAAATTCGTCATGGTGTCTTGAAGAACTTGTCAAGATTATGGAGTGTATGAAATTGAAGAAGCAATTAGTTTGGCCAATCTTTTACAAAGTGGAGCCATCAGACATAAGGCATCTGAAAAAATCTTATGGCAAAGACATGGTTCAGCATGAAAATAATTACGGAATTAATTCAGAGAGAGTACAAAAATGGAAGTCAGCTTTGTTTGAAGTGTCTAATTTATCCGGAAAGACTTACAAAACCGGGTACGAACATGAATTTATTCAAAAGATCGTGGAAGATGCCGATCAAATTAAAAGTCGTTTGCAAATACGAAGCATATAG 1569 0.362 MKKFFEKQLMNITIGIAKLLDMESDVEEEKENLISLRDRLLVAVEATDDYKTKNINDEVFVWLNETEILIQEAEKLTAQTETPQQKKECKKLLRKLLAHQFNFSGFYPVIFESFSNGNIHGSQFVCFNSREKASSQLLVALQVHKCSLIGLYGRSGSGKTTLVKAVSEKLKDICGLKVLFVKVTENSNIRTMQDEIADSLNIKFDKNSEAGRARIIFSTIERMYKILVIFDDVPAKFNPEDVGIPCNSEHCKILLTTCCQQGSDFMYCQCDIQLGPLSTEESWTLFQKHSGIDDQEYSSSYDLSNVAREVAFECEGLPGKIKDVGCSLKSKPIEEWKATLDSLKHSMGKWQIFLSFRGDDTRYGFTGNLYKDLCQGGFKTFMDDGGLQTGDQISPSLLNAIEASRLSIIVLSENYANSSWCLEELVKIMECMKLKKQLVWPIFYKVEPSDIRHLKKSYGKDMVQHENNYGINSERVQKWKSALFEVSNLSGKTYKTGYEHEFIQKIVEDADQIKSRLQIRSI* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0098 522 Gene3D - 276 351 IPR042197 -
Tpr4g0098 522 PANTHER TMV RESISTANCE PROTEIN N-LIKE 326 521 - -
Tpr4g0098 522 PANTHER TOLL/INTERLEUKIN-LIKE RECEPTOR-PROTEIN 326 521 - -
Tpr4g0098 522 Pfam TIR domain 349 510 IPR000157 GO:0007165
Tpr4g0098 522 Gene3D - 352 518 IPR035897 -
Tpr4g0098 522 SUPERFAMILY Toll/Interleukin receptor TIR domain 348 491 IPR035897 -
Tpr4g0098 522 SMART till_3 349 489 IPR000157 GO:0007165
Tpr4g0098 522 Pfam NB-ARC domain 146 350 IPR002182 GO:0043531
Tpr4g0098 522 Gene3D - 120 266 IPR027417 -
Tpr4g0098 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 347 IPR027417 -
Tpr4g0098 522 Coils Coil 19 39 - -
Tpr4g0098 522 ProSiteProfiles TIR domain profile. 348 514 IPR000157 GO:0007165
Tpr4g0098 522 PRINTS Disease resistance protein signature 148 163 - -
Tpr4g0098 522 PRINTS Disease resistance protein signature 220 234 - -
Tpr4g0098 522 PRINTS Disease resistance protein signature 314 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0098 Tpr-Chr4 1182460 1185424 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0098 349 513 Miscellaneous Gene Families AT5G44900 31.928 6.43e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0098 - K13459 mtr:MTR_5g092210 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3735 3 41679115 41685649 Tpr4g0098 4 1182460 1185424 PCT