Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3899 ATGATTGTTCATGTTCTAGGTCGCACCCTCACTTCATCTTTATATAAGACTTCTCCTTTCACTCAAAATCCAATTCAATTCAAACCCATTTTTCTTCTTCCCCTAAAGTTTCAACCTTTAATCCCAATTCATCCTTTTTCTTCTTCTTGTTCTTCCATGGCTACTTGTATTGATTCTTCATCCCCTCCTATTTCTCGTAAACCAAACGTTTCTCATCATCAACCTGATGATTGTTCATTCAACTTTGCCAAATTCTGTCGACCCACTTTTTCTGATCATGTTTCCTCTGTACCCATTTCAATGAATCATGAAAAAACCTTACAAACAAAAACCATTGTAGATGATTTTCAACATCTTCAAGTTAATGATGATGTTAAGAATGATGTTGAAAATGATGTTGGTGTTGGTGTTTTTGATGATGTTGAGGTTGATTTGTGGTTGAAGATTCAAGAAGAAGCAAGGTTAGATTTAGATAAAGAACCAATTTTATCTAGCTATTATTTCAGCTCAATTTTATCTCACAAATCATTAGAAAGTGCTTTATGTAATCAACTTTCAATTCATTTGAGTAATTTGAGTCTTTCTAGCACAACCCTTTTTGAACTTTTCATGAGTATTTTGAATAATGATGAAGATATTATAAGTGCTATGAAAGATGATTTGAAAGCAGTGAAAGAAAGAGACCCTGCTTGTATAAGTTATGCTCATTGTTTATTGAATTTCAAAGGCTTTTTAGCTATTCAAGCTCATAGGGTAGCTCATAAATTATGGTTACAAGGGAGAAAAGTTTTAGCACTTTTGATTCAAAATAGAGTATCTGAAGTTTTTGCTGTTGATATTCATCCTGGTGCTAAGATTGGTAGAGGGATTTTGTTGGATCATGCAACAGGAGTTGTTGTTGGTGAAACTGCTGTTATTGGTAATAATGTTGCAATTTTGCATAATGTTACATTAGGTGGAACAGGTAAAAATTGTGGTGATAGACATCCAAAGATTGGTGATGGTGTTTTGATTGGTGCAGGAACATGTATTTTAGGGAATATTAAGATTGGTGATGGTGCTAAAATTGGTGCTGGTTCTGTTGTTTTGAAAGATGTTCCACCAAGAACTACTGCTGTTGGTAATCCAGCTAAGTTGATTGGTGGAAAAGATAATCCTATCATGTTGGATAAGGCTCCTAGCTTTACTATGGACCATACTTCGTGGTCCGATTATGTTATCTAG 1224 0.3431 MIVHVLGRTLTSSLYKTSPFTQNPIQFKPIFLLPLKFQPLIPIHPFSSSCSSMATCIDSSSPPISRKPNVSHHQPDDCSFNFAKFCRPTFSDHVSSVPISMNHEKTLQTKTIVDDFQHLQVNDDVKNDVENDVGVGVFDDVEVDLWLKIQEEARLDLDKEPILSSYYFSSILSHKSLESALCNQLSIHLSNLSLSSTTLFELFMSILNNDEDIISAMKDDLKAVKERDPACISYAHCLLNFKGFLAIQAHRVAHKLWLQGRKVLALLIQNRVSEVFAVDIHPGAKIGRGILLDHATGVVVGETAVIGNNVAILHNVTLGGTGKNCGDRHPKIGDGVLIGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPAKLIGGKDNPIMLDKAPSFTMDHTSWSDYVI* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3899 407 CDD LbH_SAT 276 376 IPR045304 -
Tpr3g3899 407 Pfam Serine acetyltransferase, N-terminal 145 249 IPR010493 GO:0005737|GO:0006535|GO:0009001
Tpr3g3899 407 SMART SATase_N_2_a 145 249 IPR010493 GO:0005737|GO:0006535|GO:0009001
Tpr3g3899 407 SUPERFAMILY Trimeric LpxA-like enzymes 145 381 IPR011004 -
Tpr3g3899 407 TIGRFAM cysE: serine O-acetyltransferase 217 378 IPR005881 GO:0005737|GO:0006535|GO:0009001
Tpr3g3899 407 Gene3D Hexapeptide repeat proteins 279 394 - -
Tpr3g3899 407 PANTHER SERINE ACETYLTRANSFERASE 53 407 - -
Tpr3g3899 407 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 338 366 IPR018357 GO:0016740
Tpr3g3899 407 PANTHER SERINE ACETYLTRANSFERASE 53 407 - -
Tpr3g3899 407 Coils Coil 207 227 - -
Tpr3g3899 407 Pfam Bacterial transferase hexapeptide (six repeats) 329 363 IPR001451 -
Tpr3g3899 407 Gene3D serine acetyltransferase, domain 1 137 278 IPR042122 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3899 Tpr-Chr3 43459124 43460968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3899 145 405 Miscellaneous Gene Families AT2G17640 55.556 3.44e-94 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3899 K00640 - gmx:606507 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3899 3 43459124 43460968 Tpr4g0205 4 2141279 2142663 PCT