Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3280 ATGGCTAGGGTTTTGGCTCAGTCGATTAATGTTCCTGGCCTAGTGGCTGGGCACAGTCAACATAAGGGATCTGGAAAATCGAAACGATCAGTCAAAATGATGTCTACTCTGCGAACAAGCGGATTAAGAATGCCGGTTTTCTCAGGACTTCGTCCTATCAATCGTTTGGATACTATGCTGAGACCTGGAATAGATTTTCACACCAAGGTAGCAATGGCAATTTCTTCACGGCGGGCAAGGGCTAAGAGATTCATACCTAGAGCCATGTTTGAGCGTTTCACGGAGAAAGCAATCAAAGTGATAATGCTAGCTCAGGAGGAAGCAAGACGTCTTGGTCACAATTTTGTTGGAACTGAGCAGATTCTATTGGGTCTTATTGGTGAAGGCACTGGTATTGCTGCCAAGGTTTTAAAATCTATGGGAATCAACCTTAAAGATGCACGTGTGGAAGTGGAGAAGATAATTGGAAGGGGTAGTGGATTTGTTGCTGTTGAGATTCCGTTTACTCCCCGTGCAAAGCGTGTATTGGAACTTTCCCTCGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCAGAGCACTTACTTCTGGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTGAAAACCTGGGTGCTGATCCTACTAATATTCGCACACAGGTTATTCGCATGGTGGGTGAGAGTGCCGACAGTGTTACTGCTACTGTTGGCTCAGGAAGTAGCAACAATAAAATGCCAACTTTGGAGGAGTATGGAACCAATTTGACCAAGCTAGCAGAAGAGGGAAAGTTGGATCCTGTTGTGGGAAGGCAGCCACAAATTGAACGTGTCACCCAAATTTTAGGCCGTCGCACCAAAAATAATCCTTGTCTTATAGGAGAACCTGGTGTCGGTAAGACAGCAATTGCTGAAGGTCTTGCTCAGAGGATTGCAAATGGTGATGTACCTGAAACAATCGAGGGAAAAAAGGTTATAACCCTCGACATGGGTCTGCTTGTAGCTGGAACCAAATACCGTGGTGAGTTTGAGGAGAGGTTGAAGAAACTGATGGAAGAAATCAGACAAAGTGATGAGATAATACTTTTTATCGACGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGTGCTATTGATGCTGCTAACATACTAAAACCAGCTCTTGCAAGAGGTGAACTACAGTGTATTGGAGCCACAACATTGGACGAATACAGGAAGCACATTGAAAAAGACCCAGCTTTGGAGAGACGATTTCAGCCAGTTAAAGTACCAGAACCAACTGTCGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGTTATGAGATTCACCACAAGCTTCGCTATACTGATGAGGCTCTTGTAGCTGCTGCACAACTTTCGTATCAGTATATCAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCACGAGTCCGTCTTCGACATGCACAGTTGCCAGAAGAGGCAAAAGAACTTGACAAGGAGGTCAGGAAAATTGTTAAGGAGAAAGAGGAATTTGTTCGCAACCAAGACTTTGAAAAGGCCGGAGAACTACGTGATAAAGAAATGGATCTTAAGGCGCAGATCTCAGCACTTATAGAGAAAGGCAAGGAGATGAGCAAAGCAGAGACTGAGGCAGGAGATGAAGGTCCTCTTGTGACTGAAGTTGACATTCAACATATTGTGTCCTCCTGGACGGGCATTCCTGTTGATAAAGTCTCAGCAGATGAATCTGATCGCCTCCTCAAGATGGAAGATACTTTACACAAGCGAATCATTGGTCAGGATGAAGCAGTGGAAGCCATTAGTCGGGCTATCCGCCGAGCCCGGGTTGGATTGAAGAACCCTAATCGTCCAATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTGGGGAAGTCTGAATTGGCTAAAGCATTGGCTGCATATTACTTTGGCTCTGAAGAAGCCATGATTCGTCTTGACATGAGTGAATTTATGGAAAGGCACACTGTCTCCAAACTTATTGGTTCGCCTCCTGGATATGTTGGTTACACTGAAGGCGGTCAATTGACTGAAGCAGTTCGGCGTCGTCCTTACACTGTTATACTCTTTGATGAGATCGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATTCTTGAAGATGGAAGACTAACAGACAGTAAGGGCAGAACTGTGGATTTCAAGAACACACTACTTATAATGACATCAAATGTTGGAAGCAGTGTTATTGAGAAAGGAGGCCGCCGGTTTGGATTCGATCTGGATTACGATGAGAAAGATAGCAGTTATAATAGAATCAAGAGTTTGGTGACTGAGGAGCTAAAACAATACTTCAGGCCAGAGTTTTTAAATAGGTTGGATGAAATGATTGTTTTCAGGCAACTCACAAAATTAGAGGTGAAGGAAATAGCAGACATAATGCTCAAGGAAGTGTTTGAGAGACTGAAGATCAAAGAGATTGAACTTCAAGTAACAGAAAGATTTAGGGACAGGGTGGTTGACGAAGGTTATAATCCTAGTTACGGAGCTAGGCCTCTAAGAAGAGCCATAATGCGTCTTTTGGAGGATAGCATGGCTGAGAAGATGCTCGCCAGAGAGATCAAGGAGGGAGACTCTGTCATAGTGGATGTTGATTCTGACGGTAATGTGATTGTTCTCAACGGTACCAGCGGTGCTCAGGAGTCATTACCAGAGGCCCTTCCTATATAA 2763 0.4426 MARVLAQSINVPGLVAGHSQHKGSGKSKRSVKMMSTLRTSGLRMPVFSGLRPINRLDTMLRPGIDFHTKVAMAISSRRARAKRFIPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELDKEVRKIVKEKEEFVRNQDFEKAGELRDKEMDLKAQISALIEKGKEMSKAETEAGDEGPLVTEVDIQHIVSSWTGIPVDKVSADESDRLLKMEDTLHKRIIGQDEAVEAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVILFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRFGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKIKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGTSGAQESLPEALPI* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3280 920 CDD AAA 607 772 - -
Tpr3g3280 920 Pfam AAA lid domain 433 535 IPR041546 -
Tpr3g3280 920 CDD AAA 273 425 - -
Tpr3g3280 920 Pfam Clp amino terminal domain, pathogenicity island component 180 231 IPR004176 -
Tpr3g3280 920 Pfam Clp amino terminal domain, pathogenicity island component 104 156 IPR004176 -
Tpr3g3280 920 ProSiteProfiles UVR domain profile. 507 542 IPR001943 GO:0005515
Tpr3g3280 920 Gene3D - 813 913 - -
Tpr3g3280 920 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 74 919 - -
Tpr3g3280 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 527 IPR027417 -
Tpr3g3280 920 Pfam ATPase family associated with various cellular activities (AAA) 295 411 IPR003959 GO:0005524|GO:0016887
Tpr3g3280 920 Gene3D UVR domain 499 563 - -
Tpr3g3280 920 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 637 655 IPR001270 GO:0005524
Tpr3g3280 920 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 682 700 IPR001270 GO:0005524
Tpr3g3280 920 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 711 729 IPR001270 GO:0005524
Tpr3g3280 920 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 744 758 IPR001270 GO:0005524
Tpr3g3280 920 Coils Coil 503 523 - -
Tpr3g3280 920 ProSitePatterns Chaperonins clpA/B signature 2. 667 685 IPR028299 -
Tpr3g3280 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 582 900 IPR027417 -
Tpr3g3280 920 SMART ClpB_D2_small_2 813 903 IPR019489 -
Tpr3g3280 920 Gene3D - 585 811 IPR027417 -
Tpr3g3280 920 SUPERFAMILY Double Clp-N motif 91 232 IPR036628 -
Tpr3g3280 920 Gene3D - 435 579 - -
Tpr3g3280 920 Pfam C-terminal, D2-small domain, of ClpB protein 813 893 IPR019489 -
Tpr3g3280 920 Pfam AAA domain (Cdc48 subfamily) 632 806 IPR003959 GO:0005524|GO:0016887
Tpr3g3280 920 PANTHER ATP-DEPENDENT CLP PROTEASE 74 919 - -
Tpr3g3280 920 ProSiteProfiles Clp repeat (R) domain profile. 90 232 IPR004176 -
Tpr3g3280 920 SMART AAA_5 290 430 IPR003593 -
Tpr3g3280 920 SMART AAA_5 633 814 IPR003593 -
Tpr3g3280 920 ProSitePatterns Chaperonins clpA/B signature 1. 385 397 IPR018368 GO:0005524
Tpr3g3280 920 Gene3D - 89 238 IPR036628 -
Tpr3g3280 920 Gene3D - 240 433 IPR027417 -
Tpr3g3280 920 Coils Coil 344 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3280 Tpr-Chr3 36066690 36074293 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3280 K03696 - gmx:100804035 1647.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0720 3 6905282 6910900 Tpr3g3280 3 36066690 36074293 ECH
Tpr3g3280 3 36066690 36074293 Tpr3g3280 3 36066690 36074293 ECH
Tpr3g0720 3 6905282 6910900 Tpr3g3280 3 36066690 36074293 PCT