Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0720 ATGTCTAGGGTTTTGGCGCAGTCGGTTATTGTTCCTGGTTTAGTGGCTGGTCGAAGACATGACAATAACAGCAATGGATCGGTTAGACGAAGAAGGTCTGTTAGAATGATGTATGCCACAGGAACTGTTGCACCGAGATTGAGATTGACTTTTGCACCGAGATTGTCTAGTTTCTCTGGTTTGAACTCGTTGGATTCTATGTTGAGACCTCAACAGCCTTTTCATTCTAAAGTGCTCTCTCAAATTGATGGTACTAATAGAATAAGGGGTGGTAGAGGTAGCAGATGTGTAACAAGAGCCATGTTTGAGCGTTTCACGGAGAAAGCAATCAAAGTTATTATGTTGGCTCAGGAGGAAGCAAGGCGGCTGGGACACAATTTTGTTGGAACGGAACAGATTCTGTTGGGTCTTATTGGTGAAGGTACTGGCATTGCTGCTAAGGTTCTAAAGTCTATGGGAATTAACCTAAAAGATGCACGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGTTTTGTCGCTGTTGAGATTCCGTTTACTCCTCGTGCCAAGCGGGTTTTGGAACTCTCATTGGAGGAAGCTCGCCAACTTGGTCACAATTATATCGGATCTGAGCACTTGCTTTTGGGTCTTCTTCGAGAAGGTGAGGGTGTGGCAGCACGTGTTCTTGAAAATCTGGGTGCTGATCCAACTAATATTCGAACCCAGGTCATTCGCATGGTTGGTGAGGGTGCTGACAGTGTTGGGGCAACTGTTGGCTCTGGAAGTAGTAACAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCAGAGGAGGGAAAATTGGATCCTGTTGTGGGTAGGCAGGCACAAATTGAACGTGTCACTCAAATCTTGGGTCGTCGTACAAAAAATAATCCCTGTCTTATTGGGGAACCCGGTGTGGGAAAGACAGCTATTGCTGAAGGTCTCGCTCAAAGGATTGCAAATGGTGATGTCCCTGAAACCATAGAGGGAAAGAAGGTTATAACCCTAGATATGGGCCTACTTGTAGCTGGAACTAAATACCGTGGAGAATTTGAGGAGAGATTGAAAAAACTAATGGAGGAAATCAAACAAAGTGATGAAATAATACTTTTCATTGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCGGCAAACATATTGAAACCAGCTCTTGCTAGAGGTGAACTACAGTGTATAGGAGCCACAACACTAGATGAATATAGGAAGCACATTGAAAAAGATCCAGCATTGGAGAGGCGATTCCAACCAGTTAAAGTGCCAGAACCAACTGTGAGTGAAACCATACAAATTCTTAAAGGTCTTAGAGAGCGCTATGAGATTCACCACAAGCTCCGTTATACCGATGATGCTCTTGTAGCTGCTGCAGAGCTGTCACATCAATATATCAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTGATTGACGAAGCTGGTTCCCGAGTCCGACTTCAGCATGCACAGTTACCTGAAGAAGCAAGAGGTCTTGAAAAGGAGGTTAGGCAGATAGTCAAGGAGAAAGATGAAGCTGTTCGCAACCAAGAATTTGAAAAGGCTGGAGAGCTACGGGATAAAGAAATGGATCTTAAGACTCAGATATCAGCACTTATTGAAAAAAACAAGGAGATGAACAAGGCAGAGAGTGAGGCAGGAGATGTTGGTGCACTTGTGACTGAAGTTGACATACAGCATATTGTTGCTGCCTGGACTGGTATCCCTGTTGACAAAGTCTCGGTTGACGAATCTGACCGCCTTCTCAAGATGGAAGATACCTTACACAAACGCGTTATTGGTCAGCATGAAGCAGTTGAAGCCATTAGTCGGGCTATCCGTCGAGCACGTGTTGGACTTAAGAACCCTAACCGGCCAATAGCCAGCTTCATCTTTTCTGGTCCTACTGGTGTGGGGAAGTCTGAATTGGCCAAAACATTGGCCACATACTACTTTGGATCTGAAGAAGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACAGTCTCCAAGCTCATCGGTTCACCTCCTGGATATGTTGGTTATACCGAGGGTGGTCAACTGACCGAGGCAGTTCGTCGTCGTCCCTACACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTCTTCAACATGATGCTTCAAATCTTGGAAGATGGGAGGCTAACAGATAGTAAGGGAAGAACTGTGGACTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGTCGGTTTGGATTCGATCTGGATTATGATGAGAAAGATAGCAGTTATAATAGAATCAAGAGTTTGGTCACCGAGGAGCTGAAGCAATACTTTAGGCCAGAGTTCTTGAATAGGCTGGATGAAATGATTGTTTTCAGGCAACTCACAAAACTAGAAGTTAAGGAAATAGCTGATATAATGCTGAAGGAGGTGTTTGAGAGATTGAAAGTCAAAGAGATTGAGCTTTCAGTGACAGAGAGATTCAAGGAGAGAGTCGTCGATGAAGGTTTTAATCCTAGTTATGGGGCCAGGCCTCTAAGAAGAGCCATAATGCGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTTTCCAGGGAGATTAAAGAGGGCGACTCTGTTATAGTGGATGCTGATTCTGATGGAAATGTGATTGTGCTCAACGGTAGCAGTGGTGCTCCAGATTCATTGCCAGAAGCTATTCCAGTGTAG 2799 0.4444 MSRVLAQSVIVPGLVAGRRHDNNSNGSVRRRRSVRMMYATGTVAPRLRLTFAPRLSSFSGLNSLDSMLRPQQPFHSKVLSQIDGTNRIRGGRGSRCVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGEGADSVGATVGSGSSNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQAQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVSETIQILKGLRERYEIHHKLRYTDDALVAAAELSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARGLEKEVRQIVKEKDEAVRNQEFEKAGELRDKEMDLKTQISALIEKNKEMNKAESEAGDVGALVTEVDIQHIVAAWTGIPVDKVSVDESDRLLKMEDTLHKRVIGQHEAVEAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKTLATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRFGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELSVTERFKERVVDEGFNPSYGARPLRRAIMRLLEDSMAEKMLSREIKEGDSVIVDADSDGNVIVLNGSSGAPDSLPEAIPV* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0720 932 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 85 932 - -
Tpr3g0720 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 911 IPR027417 -
Tpr3g0720 932 SMART AAA_5 302 442 IPR003593 -
Tpr3g0720 932 SMART AAA_5 645 826 IPR003593 -
Tpr3g0720 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 262 544 IPR027417 -
Tpr3g0720 932 ProSitePatterns Chaperonins clpA/B signature 2. 679 697 IPR028299 -
Tpr3g0720 932 Pfam AAA domain (Cdc48 subfamily) 644 818 IPR003959 GO:0005524|GO:0016887
Tpr3g0720 932 ProSiteProfiles UVR domain profile. 519 554 IPR001943 GO:0005515
Tpr3g0720 932 Gene3D - 101 248 IPR036628 -
Tpr3g0720 932 SUPERFAMILY Double Clp-N motif 103 243 IPR036628 -
Tpr3g0720 932 ProSitePatterns Chaperonins clpA/B signature 1. 397 409 IPR018368 GO:0005524
Tpr3g0720 932 SMART ClpB_D2_small_2 825 915 IPR019489 -
Tpr3g0720 932 Pfam AAA lid domain 446 547 IPR041546 -
Tpr3g0720 932 Gene3D - 252 445 IPR027417 -
Tpr3g0720 932 Coils Coil 356 376 - -
Tpr3g0720 932 Coils Coil 551 571 - -
Tpr3g0720 932 Pfam Clp amino terminal domain, pathogenicity island component 192 243 IPR004176 -
Tpr3g0720 932 Pfam Clp amino terminal domain, pathogenicity island component 116 168 IPR004176 -
Tpr3g0720 932 Pfam C-terminal, D2-small domain, of ClpB protein 825 905 IPR019489 -
Tpr3g0720 932 Gene3D UVR domain 511 569 - -
Tpr3g0720 932 CDD AAA 285 437 - -
Tpr3g0720 932 ProSiteProfiles Clp repeat (R) domain profile. 102 244 IPR004176 -
Tpr3g0720 932 PANTHER ATP-DEPENDENT CLP PROTEASE 85 932 - -
Tpr3g0720 932 Gene3D - 448 591 - -
Tpr3g0720 932 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 649 667 IPR001270 GO:0005524
Tpr3g0720 932 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 694 712 IPR001270 GO:0005524
Tpr3g0720 932 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 723 741 IPR001270 GO:0005524
Tpr3g0720 932 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 756 770 IPR001270 GO:0005524
Tpr3g0720 932 Gene3D - 598 823 IPR027417 -
Tpr3g0720 932 Coils Coil 515 535 - -
Tpr3g0720 932 Pfam ATPase family associated with various cellular activities (AAA) 307 423 IPR003959 GO:0005524|GO:0016887
Tpr3g0720 932 CDD AAA 619 784 - -
Tpr3g0720 932 Gene3D - 825 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0720 Tpr-Chr3 6905282 6910900 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0720 K03696 - gmx:100796195 1569.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0720 3 6905282 6910900 Tpr3g3280 3 36066690 36074293 ECH
Tpr3g0720 3 6905282 6910900 Tpr3g0720 3 6905282 6910900 ECH
Tpr3g0720 3 6905282 6910900 Tpr3g3280 3 36066690 36074293 PCT