Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3270 ATGGCAGAAGAAGAAGATAACGGAAGCACAAGCAGAGAAGAACAAGAAGAAGCATTAGTCGCTTTAATCGAACACCGTACCTGCGAAGTTAACAATCTCCGTAAACGTCTCGCTTATTACAAAAATCAGCTTGATGAAGCGGAAAAGAGGCTTAAAGATACAGAATTGAAATTGGCTCGTCTTCGAGGTCAAACTAATCCAGTTCAATCTACAACTAAAAAATTAACAAATTCTGATAATAATGATAATAATAATAATGGAATTGTAGCTGTGAAAACAGAGCCTAGATCAAATAGTCCTATTATTGATAGGAATGAGCGAACTTACAAAAGTAATAAACCTGCACTTGTTATTCCTGTTGTTACTCCTAAGGTTTCGCGGCCTCCTGCTGCTGCTGCCAGAGCTTCTTGTTCTGAAACAGTTACTCCACCGGTTTCTTCTACTTCAGTTAGTGCTGGAAAATCTGATAAGGCTCGTCGAGAGCAACACAATGTTGAAGTTAAGGATAAAGGGATCAAAAGAAAATTTGAACAGAAAGAACACCAGGAATTGATTCCTTTAATACGTAAGAGTTCCACAGTGAAATTGGTACACTGCCAAGGAAGCAACCACATCTCAAGTCAGCACAAGAGGAAATTGCGGAGTATTGCTTTGTCTCCTGTGAATGATCAGATTTTTGCAACTAGTGCTTTGGACGGAGTGGTCAACTTTTGGCAAGTCCAATCTAGGGGATCAGGAGCCTCTCTGCTTAATTCTTCTGATTCCGCATCCCAAAAAAAGAGATGGCCAGAAGATATAGCTTGGCACCCGGAAGGAAACCGGCTCTTTTCAGTATATACCGCTGATAGTGGAGACTCACAAGTATCAATTACAGATCTGAATAAACAAGGGGGAGCACGTGTGAAATACTTAGAGGACAAGCCCCATTTTAAGGGAATTATCAATGGCATTGTTTTTATGCCCTGGGAAGATACATGTTTTGTAACTGGTGGAAGTGACCATGCTGTTATACTTTGGAGTGAGCAGGATGGTGAGAACAAATGGAAGCCAAAACCATTGCACAGGAATCTTCATTCTTCTGCTGTCATGGGTGTTGCTGGTATGCAGCAGAAGCAGATTGTGTTATCTGCAGGTGCAGACAGGAGAATATTTGGATTTGATGTTGGTGTGGGAAGAGCAGATTTCAGTCATCAGATTGATAGTAAATGCATGAGTGTCGTTCCCAATCCGCGTGACTTCAACTTGTTTATGGTTCAAACAGGGACACACGAAAAGCAGCTTCGACTATTTGATATTCGATTGAGGCGGACAGAACTTCATGCTTTTGGGTGGAAACAAGAAAGCAGTGAATCCCAATCAGCTCTGATAAATCAGGCTTGGTCTCCTGATGGTCTTTATATAACATCTGGTTCGGCAGATCCTGTGATTCACATATTTGATATAAGATATAATGTTAACAGGCCTTCGCAATCTATAAGAGCTCATCAGAAACGAGTCTTCGGAGCCCTGTGGCTTCAGTCTCTTCCTCTTCTCATTTCCATATCATCTGATCTCAACATTGGGTTGCACACCCTGCAGAAGTAG 1584 0.4148 MAEEEDNGSTSREEQEEALVALIEHRTCEVNNLRKRLAYYKNQLDEAEKRLKDTELKLARLRGQTNPVQSTTKKLTNSDNNDNNNNGIVAVKTEPRSNSPIIDRNERTYKSNKPALVIPVVTPKVSRPPAAAARASCSETVTPPVSSTSVSAGKSDKARREQHNVEVKDKGIKRKFEQKEHQELIPLIRKSSTVKLVHCQGSNHISSQHKRKLRSIALSPVNDQIFATSALDGVVNFWQVQSRGSGASLLNSSDSASQKKRWPEDIAWHPEGNRLFSVYTADSGDSQVSITDLNKQGGARVKYLEDKPHFKGIINGIVFMPWEDTCFVTGGSDHAVILWSEQDGENKWKPKPLHRNLHSSAVMGVAGMQQKQIVLSAGADRRIFGFDVGVGRADFSHQIDSKCMSVVPNPRDFNLFMVQTGTHEKQLRLFDIRLRRTELHAFGWKQESSESQSALINQAWSPDGLYITSGSADPVIHIFDIRYNVNRPSQSIRAHQKRVFGALWLQSLPLLISISSDLNIGLHTLQK* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3270 527 MobiDBLite consensus disorder prediction 63 108 - -
Tpr3g3270 527 Pfam WD domain, G-beta repeat 457 480 IPR001680 GO:0005515
Tpr3g3270 527 Gene3D - 154 407 IPR015943 GO:0005515
Tpr3g3270 527 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 4 525 - -
Tpr3g3270 527 SMART WD40_4 200 239 IPR001680 GO:0005515
Tpr3g3270 527 SMART WD40_4 297 340 IPR001680 GO:0005515
Tpr3g3270 527 SMART WD40_4 485 524 IPR001680 GO:0005515
Tpr3g3270 527 SMART WD40_4 443 480 IPR001680 GO:0005515
Tpr3g3270 527 SMART WD40_4 349 387 IPR001680 GO:0005515
Tpr3g3270 527 MobiDBLite consensus disorder prediction 134 166 - -
Tpr3g3270 527 MobiDBLite consensus disorder prediction 63 93 - -
Tpr3g3270 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 242 IPR001680 GO:0005515
Tpr3g3270 527 Coils Coil 30 64 - -
Tpr3g3270 527 MobiDBLite consensus disorder prediction 139 153 - -
Tpr3g3270 527 SUPERFAMILY WD40 repeat-like 211 523 IPR036322 GO:0005515
Tpr3g3270 527 Gene3D - 411 527 IPR015943 GO:0005515
Tpr3g3270 527 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 4 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3270 Tpr-Chr3 35977599 35982821 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3270 - - gmx:100799587 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3270 3 35977599 35982821 Tpr3g3270 3 35977599 35982821 ECH
Tpr3g0727 3 6998776 7002595 Tpr3g3270 3 35977599 35982821 PCT