Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0727 ATGATAGAAAAGAAAATGGTACTATCTCATCATCAACAACAAGAACTGCATCCAGTAAGAAGAAGAGAGGAACATCAAGAACATGAACAAGAAGAAGAAGCATTGCTCGCTCTCGTCAAACACCGTCATTATCAAGTCAGAGAGCTCCGTTACTGTGTTTCCACTTACACAGCCAAGCTTAGGGAAGCGGAAGAGAAGTTAAGAAGTTCTCAATCCAAATTGGCTTTTTTTCAAGGTAAGACTAATGGAAAGACAAAACATGGATCAAACAGTTTCAATTTCAATCATAAAAATGAAACTCCTTCCAAAATCCATCATCAATCAAAGCCTCAAAGCGCACGGTTACCGGATTCTGCAAAAGCTTCAACAAATTCTAGTAATTATGAAACTAACCGATCAACTTTTAGTACTCAGAGACTTCCTACTGAGAAGGATGATGTCAGAGGAACAAAAAGGAAGTTTGAAATGAAGGGACAAAAGGATTTGGTTCCTTTAATAGGTAGACGTTCCCTAGCACAAATGGTGAACTATGGAATGGGATCAAGCTACATATCAAGTCTACACACCAGAAAATTGAGAAATCTTGCTCTCTGTCCTGTGAATGATCAGCATTTTGTGACTAGTGCTTTGGATGGAGTGGTGCGCTTGTGGGAAGTTCACTCTCGAGGATTGACAGCCAATATTCTTAGCACTACTGATTGTGCAACTGAAGAGCAGAAGAGGTGGCCCGAAGATATAGCTTGGCATCCAGATGGAAAGAGCCTTTTTTCAGTATATAGTGCTGATAGTCAAGACTCTCAAATATCAGTTACAAAATTTAAAGAAGGTGAAAGGAGTGCACAAGTGAGTTTCTTGGAAGACAAGCCACATGTTAAGGGTGCTATCAATAGCATTGTTTTTCTGCCATGGGAAAATACTTGTTTTGCAACAGCAGGAACTGACCATAGTGTTATGATATGGAGTGAGAATGTTGAGAAAAAATGGAAGCCAGAAGCATTGCATAAGAATTTTCATACCTCTGCTGTCATGGGAGTTGCTGGTGTTCAGCACAAGAAACTTGTGTTGTCTGTTGGTAAAGACAGGAGAATTTTGGGGTACAATGCTGAAGAAGGAAAACAAGATTTCATGGTTCAGGTTGATAGTAAATGCTTGAGTATATTGCCAAATCCACGAGACTTCAATTTGTTCATGGTTCAAACAGGGACTCATGATAAGCAACTTCGACTATTTGATATTAGATTGAAGCATAAAGAGGTTCATGCATTTGGATGGAAGCAAGATAGTAGTGATACACAATCAGCTCTGGTAAATCAAGATTGGTCTCCAAGTGGACTTTACATAACATCTGGTTCAGCTGATCCATTGATTCACATATTTGATATTAGATATAATGGTCACAAGCCTTCTCAATCCATTGAAGCTCATAAAAAAAGAGTCTTCAAAGCCATGTGGCATCAGTCTCTTCCACTTCTCATTTCCATATCATCTGATCTCAACATTGGATTACACCATCTTGTCAATGCTTGA 1527 0.3897 MIEKKMVLSHHQQQELHPVRRREEHQEHEQEEEALLALVKHRHYQVRELRYCVSTYTAKLREAEEKLRSSQSKLAFFQGKTNGKTKHGSNSFNFNHKNETPSKIHHQSKPQSARLPDSAKASTNSSNYETNRSTFSTQRLPTEKDDVRGTKRKFEMKGQKDLVPLIGRRSLAQMVNYGMGSSYISSLHTRKLRNLALCPVNDQHFVTSALDGVVRLWEVHSRGLTANILSTTDCATEEQKRWPEDIAWHPDGKSLFSVYSADSQDSQISVTKFKEGERSAQVSFLEDKPHVKGAINSIVFLPWENTCFATAGTDHSVMIWSENVEKKWKPEALHKNFHTSAVMGVAGVQHKKLVLSVGKDRRILGYNAEEGKQDFMVQVDSKCLSILPNPRDFNLFMVQTGTHDKQLRLFDIRLKHKEVHAFGWKQDSSDTQSALVNQDWSPSGLYITSGSADPLIHIFDIRYNGHKPSQSIEAHKKRVFKAMWHQSLPLLISISSDLNIGLHHLVNA* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0727 508 Gene3D - 386 508 IPR015943 GO:0005515
Tpr3g0727 508 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 227 IPR001680 GO:0005515
Tpr3g0727 508 SUPERFAMILY WD40 repeat-like 186 502 IPR036322 GO:0005515
Tpr3g0727 508 Gene3D - 16 385 IPR015943 GO:0005515
Tpr3g0727 508 MobiDBLite consensus disorder prediction 105 138 - -
Tpr3g0727 508 Pfam WD domain, G-beta repeat 437 460 IPR001680 GO:0005515
Tpr3g0727 508 SMART WD40_4 178 218 IPR001680 GO:0005515
Tpr3g0727 508 SMART WD40_4 415 460 IPR001680 GO:0005515
Tpr3g0727 508 SMART WD40_4 465 504 IPR001680 GO:0005515
Tpr3g0727 508 SMART WD40_4 278 321 IPR001680 GO:0005515
Tpr3g0727 508 SMART WD40_4 329 367 IPR001680 GO:0005515
Tpr3g0727 508 MobiDBLite consensus disorder prediction 1 28 - -
Tpr3g0727 508 Coils Coil 53 80 - -
Tpr3g0727 508 MobiDBLite consensus disorder prediction 99 152 - -
Tpr3g0727 508 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 12 116 - -
Tpr3g0727 508 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 101 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0727 Tpr-Chr3 6998776 7002595 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0727 - - gmx:100799587 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0727 3 6998776 7002595 Tpr3g0727 3 6998776 7002595 ECH
Tpr3g0727 3 6998776 7002595 Tpr3g3270 3 35977599 35982821 PCT