Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3265 ATGGAAACACTCACCCCTGAGCCTGGAAAATCATCACCGCCATTGGATCATCATCATTCCAAACATGATGGAGCTGCTTTGAAAGACAGCACAGAAGCAGAGCTCACCAAAATCAGCCTCATGAGAGCTCTTGTTGAAAGCCGTGACCCTTCTTCTAAGGAAGTAGATGATTTGATGATTAGAAGATTTTTGAGAGCTCGTGATTTAGATGTAGACAAAGCTTCAACGATGTTTCTCAAGTACTTGAAATGGAAACATTCATTTGTTCCAAATGGTTCTGTTTCCCCTTCAGAGATCTCTGATGATCTTGCACAGGAAAAGATGTATGTTCAAGGAGTGGATAAAAAGGGTCGACCTATAACTGTTGCTTTTGCTGCTAAACATTTTCAAAACAAAAATGGTTTGGATGCATTCAAACGATATGTGGTTTTTGCTCTTGAGAAACTATGTTCAAGGATGCCAGCAGGGGAAGAAAAGTTTCTTGCAATTGCAGATATTAAGGGATGGGGATATGCAAACAGTGACATTCGTGGATACCTTGGTGCTCTAACCATTCTACAAGATTACCATCCAGAGAGATTAGGAAAATTGTTCATAGTCCATGCACCTTATATGTTCATGAAAGTATGGAAACTTATTTACCCTTTCATTGATGACAATACCAAGAAGAAGATAGTATTTGTTGAGACTAAGAAGCTGAAATCAACATTGCTTGAAGAGATTGATGAGAGTCAACTCCCAGAGATATATGGAGGCCAACTTGCATTAGTTCCAATACAGGATTCCTGA 789 0.3929 METLTPEPGKSSPPLDHHHSKHDGAALKDSTEAELTKISLMRALVESRDPSSKEVDDLMIRRFLRARDLDVDKASTMFLKYLKWKHSFVPNGSVSPSEISDDLAQEKMYVQGVDKKGRPITVAFAAKHFQNKNGLDAFKRYVVFALEKLCSRMPAGEEKFLAIADIKGWGYANSDIRGYLGALTILQDYHPERLGKLFIVHAPYMFMKVWKLIYPFIDDNTKKKIVFVETKKLKSTLLEEIDESQLPEIYGGQLALVPIQDS* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3265 262 SUPERFAMILY CRAL/TRIO domain 98 254 IPR036865 -
Tpr3g3265 262 MobiDBLite consensus disorder prediction 1 30 - -
Tpr3g3265 262 Pfam CRAL/TRIO domain 106 252 IPR001251 -
Tpr3g3265 262 SUPERFAMILY CRAL/TRIO N-terminal domain 14 91 IPR036273 -
Tpr3g3265 262 PANTHER OS03G0850700 PROTEIN 21 262 - -
Tpr3g3265 262 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 96 258 IPR001251 -
Tpr3g3265 262 SMART CRAL_TRIO_N_2 56 81 IPR011074 -
Tpr3g3265 262 MobiDBLite consensus disorder prediction 12 30 - -
Tpr3g3265 262 SMART sec14_4 102 255 IPR001251 -
Tpr3g3265 262 CDD SEC14 109 253 IPR001251 -
Tpr3g3265 262 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 21 262 - -
Tpr3g3265 262 Gene3D - 5 260 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3265 Tpr-Chr3 35934596 35937224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3265 62 247 Acyl Lipid Metabolism Gene Families AT5G47730 27.228 8.90e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3265 - - gmx:100797666 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0729 3 7011297 7016012 Tpr3g3265 3 35934596 35937224 ECH
Tpr3g3265 3 35934596 35937224 Tpr3g3265 3 35934596 35937224 ECH
Tpr3g0729 3 7011297 7016012 Tpr3g3265 3 35934596 35937224 PCT