Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3259 ATGGGTGGAGGAAGTATCAAAAAGAAGAACTTCAAAAATGTTTCAATAGATCACGTGCTTGAAGCTTTAGGTGAAACAAAAGAAGAAAGGGATATTCGTATTCGAAGCCTTTTCAATTTTTTCGATGCAGGGAATAATGGGTATTTGGATTATAGTCAGATAGAGAAAGGGTTATCTGCATTGCAAATTCCAGCTGAGTATAAATATGCAAGGGAACTTTTCAAGGTTTGTGATTCTAATAGTGATGGTAGAGTTGAATACAATGAGTTTCGTAGATATATGGATGATAAGGAAATGGAACTTTATTGTATCTTTCAAGCTATTGATGTGGAACATAGTGGCAGTATAGAACCTGAAGAGCTTTGGGATGCACTTGAAAGGGCTGGAATTGAAATGGACGAAGAGGAGCTTGCTCGCTTTGTGGAGCATGTCGACAAGGACAATAATGGAACTATCACATTTGAAGAATGGAGAGATTTTCTTCTACTTTACCCTCACGAAGCAACTATCGAAAATATATATCACCACTGGGAGAGAGTGTACCATGTAGACATTGGAGAGCAAGCTGTGATTCCTGAAGACATTAGCAAGCACACTCACCGCAGCAAATATTTTATCGCTGGAGGAATAGCAGGTGCTACTTCACGTACATTTACTGCTCCTCTTGATCGTCTGAAGGTGGTCTTGCAAGTTCAGACTACACGTTCTTCTGTTATGTCAGCAGTCACGACGATATGGAAGCGAGATGGTTTAAGTGGGTTTTTCCGAGGTAATGGATTGAATGTTGTGAAGGTATCACCTGAAAGTGCCATCAAATTCTATGCTTTTGAAATGCTGAAAAAGGTAATTGGAGATGCTCAAGGCAACAAGTCCGATCTCGGTGCTGCTGAAAGGCTTGTAGCAGGTGGTGTGGCTGGTGGAATTGCGCAGACCGCAATCTATCCAATGGATCTTATCAAAACTAGGTTGCAGACTTGTGCCTCTGAAGGTGGAAGGGCTCCTAAACTTTGGACACTCACAAAGAATATATGGATTCAAGAGGGACCTCGAGCTTTCTACCGAGGGCTTCTTCCATCTGTGATCGGCATGATTCCTTATGCTGGCATTGATCTCGCTTTCTATGATACCTTGAAAGATATGTCCAAGAAATATATTATTCATGACAGTGACCCTGGTCCTCTGGTACAACTAGGATGTGGGACAATTTCTGGAACCCTTGGAGCTACTTGTGTCTATCCACTGCAGGTTATTCGTACTAGGCTGCAGGCACAACCTTCAAACAGTTCCGATGCTTACAAGGGGATGTGTGATGCATTTTTGAGAACTTTTCAGCGTGAAGGTTTTATAGGTTTCTACAAGGGACTCCTTCCAAATTTACTCAAAGTTGTACCAGCTGCGAGTATTACTTATATGGTCTATGAAAGCATGAAGAAAAGTCTCGATCTAGAGTAA 1452 0.4153 MGGGSIKKKNFKNVSIDHVLEALGETKEERDIRIRSLFNFFDAGNNGYLDYSQIEKGLSALQIPAEYKYARELFKVCDSNSDGRVEYNEFRRYMDDKEMELYCIFQAIDVEHSGSIEPEELWDALERAGIEMDEEELARFVEHVDKDNNGTITFEEWRDFLLLYPHEATIENIYHHWERVYHVDIGEQAVIPEDISKHTHRSKYFIAGGIAGATSRTFTAPLDRLKVVLQVQTTRSSVMSAVTTIWKRDGLSGFFRGNGLNVVKVSPESAIKFYAFEMLKKVIGDAQGNKSDLGAAERLVAGGVAGGIAQTAIYPMDLIKTRLQTCASEGGRAPKLWTLTKNIWIQEGPRAFYRGLLPSVIGMIPYAGIDLAFYDTLKDMSKKYIIHDSDPGPLVQLGCGTISGTLGATCVYPLQVIRTRLQAQPSNSSDAYKGMCDAFLRTFQREGFIGFYKGLLPNLLKVVPAASITYMVYESMKKSLDLE* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3259 483 Pfam Mitochondrial carrier protein 392 480 IPR018108 -
Tpr3g3259 483 Pfam Mitochondrial carrier protein 202 284 IPR018108 -
Tpr3g3259 483 Pfam Mitochondrial carrier protein 292 383 IPR018108 -
Tpr3g3259 483 ProSiteProfiles EF-hand calcium-binding domain profile. 29 64 IPR002048 GO:0005509
Tpr3g3259 483 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 48 480 - -
Tpr3g3259 483 ProSiteProfiles EF-hand calcium-binding domain profile. 104 131 IPR002048 GO:0005509
Tpr3g3259 483 ProSitePatterns EF-hand calcium-binding domain. 145 157 IPR018247 -
Tpr3g3259 483 ProSiteProfiles Solute carrier (Solcar) repeat profile. 199 282 IPR018108 -
Tpr3g3259 483 Gene3D - 4 103 - -
Tpr3g3259 483 ProSiteProfiles Solute carrier (Solcar) repeat profile. 293 380 IPR018108 -
Tpr3g3259 483 ProSitePatterns EF-hand calcium-binding domain. 78 90 IPR018247 -
Tpr3g3259 483 SUPERFAMILY Mitochondrial carrier 198 474 IPR023395 -
Tpr3g3259 483 CDD EFh 100 161 IPR002048 GO:0005509
Tpr3g3259 483 ProSiteProfiles Solute carrier (Solcar) repeat profile. 391 479 IPR018108 -
Tpr3g3259 483 SUPERFAMILY EF-hand 25 197 IPR011992 -
Tpr3g3259 483 Gene3D Mitochondrial carrier domain 195 481 IPR023395 -
Tpr3g3259 483 PRINTS Mitochondrial carrier protein signature 204 217 IPR002067 GO:0055085
Tpr3g3259 483 PRINTS Mitochondrial carrier protein signature 217 231 IPR002067 GO:0055085
Tpr3g3259 483 PRINTS Mitochondrial carrier protein signature 257 277 IPR002067 GO:0055085
Tpr3g3259 483 PRINTS Mitochondrial carrier protein signature 308 326 IPR002067 GO:0055085
Tpr3g3259 483 PRINTS Mitochondrial carrier protein signature 353 371 IPR002067 GO:0055085
Tpr3g3259 483 PRINTS Mitochondrial carrier protein signature 400 422 IPR002067 GO:0055085
Tpr3g3259 483 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Tpr3g3259 483 ProSiteProfiles EF-hand calcium-binding domain profile. 132 167 IPR002048 GO:0005509
Tpr3g3259 483 Pfam EF-hand domain pair 33 94 IPR002048 GO:0005509
Tpr3g3259 483 Pfam EF-hand domain pair 99 159 IPR002048 GO:0005509
Tpr3g3259 483 PANTHER SOLUTE CARRIER FAMILY 25 48 480 - -
Tpr3g3259 483 SMART efh_1 69 97 IPR002048 GO:0005509
Tpr3g3259 483 SMART efh_1 100 128 IPR002048 GO:0005509
Tpr3g3259 483 SMART efh_1 136 164 IPR002048 GO:0005509
Tpr3g3259 483 SMART efh_1 33 61 IPR002048 GO:0005509
Tpr3g3259 483 Gene3D - 112 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3259 Tpr-Chr3 35898355 35901828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3259 14 483 EF-hand Containing Proteins AT5G51050 71.186 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3259 K14684 - gmx:100801703 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0739 3 7083490 7087999 Tpr3g3259 3 35898355 35901828 ECH
Tpr3g3259 3 35898355 35901828 Tpr3g3259 3 35898355 35901828 ECH