Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3228 ATGGCTGATGAAGTTCCAAAATTAACAACTCAAGAGGCAGTGCCTCCTGCTGAGACCGAATCCACTGATGAGCCCAAGCCCATTCCCGAGCCCGAGAAAAAGCCCGTTGAAAACAATACTCTAGAGACTGTGACTGAAACCGATGTGTCAAAGCCTGGTGACGATGAAAAAGTTCCTGAATCAGGTTCGTTCAAGGAAGAGAGTACTATCGTTGGCGAGTTACCTGAAGCTGAGAAAAAAGCACTTCAAGAGCTAAAACAGCTTATTCAAGAAGCACTTAACAAACATGAATTCTCAGCAGTTACAACTCCCAAGCAAGAAAAATCCGAACCAGAACCCGAACCCGAACCAACACCAGAAGCTGAAACACAACCACCTGTTGATGATAACAAGAAAGAAGAACAGAATGAACAAGTTTCTGAAACGGAATCTGTTGTTGCTGTTACTACCGCTGATGATGACGTGTCACCACCACCACCGGTGACTGAACCTGAGGAAGCTAAAGAAGAAAAGAAGGAAGCTGATGTTGCTGCTTCTTCTGTAGATGAAGATGGAGCTAAAACGGTTGAAGCAATTGAAGAAACCGTTGTAGCTGTCTCTTCATCAATTCCAGAACAACAACAACAACAACCAGAAGAGGTGTCAATTTGGGGAATACCACTCCTTTTAGACGAAAGAACTGACGTTATTCTGTTGAAATTTCTCCGAGCGAGAGACTTTAAAGTGAAAGAAGCATTCACAATGATTAAGGACACAATTCGTTGGAGAAAAGAGTTCAAAATCGACGAATTATTATTCGATGAAAATTTAAGCGATGAATATTTAGAGAAAACGGTTTACATGCATGGATATGATAAAGAAGGACACCCTGTTTGTTATAACATTTATGGAGAATTTGATAACAAGGAAGTTTATAAGAAAACATTTTCTGATGAAGAAAACAGACAAAAGTTTCTGAGATGGAGAATTCAGTTTTTGGAAAAGAGTATTAGGAAATTGGATTTTAATCCTGGTGGTATATGTACTATTGTTCAGGTTAATGATCTTAAGAATTCTCCTGGTCCTACTAAATGGGAGCTTAGACAAGCTACTAAACAAGCACTTCAATTGCTTCAGGATAATTATCCTGAATTTCTAGCTAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTAGCAGTGAACAGGATGATAAGTCCATTTCTTACACAAAGAACAAAAAGCAAGTTTGTATTTGCAGGACCATCCAAATCAGCTGAGACACTTCTAAGATACATAGCTCCGGAGCAACTTCCTGTCAAATATGGTGGATTAAGCAAAGATGGTGAATTTGGAATTACTGATGCTGTTACAGAAATTACAGTGAGGCCTGCGGCAAAACACACCGTGGAATTTCCAGTTACTGAGAATTGTCTACTATCTTGGGAGCTAAGAGTAATTGGGTGGGAAGTAAGCTATGGTGCCGAATTTGTGCCAAGTTCAGAAGGAAGCTACACTGTGATCATCCAGAAGACTAGAAAAGTTGGTTCATCAGAAGAACCAGTGCTTTGCAACAACTATAAAATTGGTGAACCTGGGAAAGTTGTTCTCACCATTGACAATTCAAGTTCTAAGAAGAAGAAGCTCTTGTATCGCTTGAAGACCAAGCCTTCAACTTCTGATTAA 1665 0.3982 MADEVPKLTTQEAVPPAETESTDEPKPIPEPEKKPVENNTLETVTETDVSKPGDDEKVPESGSFKEESTIVGELPEAEKKALQELKQLIQEALNKHEFSAVTTPKQEKSEPEPEPEPTPEAETQPPVDDNKKEEQNEQVSETESVVAVTTADDDVSPPPPVTEPEEAKEEKKEADVAASSVDEDGAKTVEAIEETVVAVSSSIPEQQQQQPEEVSIWGIPLLLDERTDVILLKFLRARDFKVKEAFTMIKDTIRWRKEFKIDELLFDENLSDEYLEKTVYMHGYDKEGHPVCYNIYGEFDNKEVYKKTFSDEENRQKFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLKNSPGPTKWELRQATKQALQLLQDNYPEFLAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAPEQLPVKYGGLSKDGEFGITDAVTEITVRPAAKHTVEFPVTENCLLSWELRVIGWEVSYGAEFVPSSEGSYTVIIQKTRKVGSSEEPVLCNNYKIGEPGKVVLTIDNSSSKKKKLLYRLKTKPSTSD* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3228 554 MobiDBLite consensus disorder prediction 125 139 - -
Tpr3g3228 554 MobiDBLite consensus disorder prediction 101 115 - -
Tpr3g3228 554 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 449 548 IPR036598 -
Tpr3g3228 554 SMART sec14_4 273 440 IPR001251 -
Tpr3g3228 554 PANTHER PATELLIN-3 PROTEIN 13 554 - -
Tpr3g3228 554 Pfam CRAL/TRIO, N-terminal domain 211 251 IPR011074 -
Tpr3g3228 554 MobiDBLite consensus disorder prediction 23 39 - -
Tpr3g3228 554 SUPERFAMILY CRAL/TRIO domain 277 440 IPR036865 -
Tpr3g3228 554 MobiDBLite consensus disorder prediction 96 182 - -
Tpr3g3228 554 MobiDBLite consensus disorder prediction 48 63 - -
Tpr3g3228 554 ProSiteProfiles GOLD domain profile. 447 548 IPR009038 -
Tpr3g3228 554 MobiDBLite consensus disorder prediction 163 182 - -
Tpr3g3228 554 SUPERFAMILY CRAL/TRIO N-terminal domain 68 267 IPR036273 -
Tpr3g3228 554 Pfam CRAL/TRIO domain 278 437 IPR001251 -
Tpr3g3228 554 PANTHER PATELLIN-1 13 554 IPR044834 GO:0008289
Tpr3g3228 554 SMART CRAL_TRIO_N_2 227 252 IPR011074 -
Tpr3g3228 554 Gene3D - 200 452 IPR036865 -
Tpr3g3228 554 MobiDBLite consensus disorder prediction 1 76 - -
Tpr3g3228 554 CDD SEC14 275 438 IPR001251 -
Tpr3g3228 554 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 267 443 IPR001251 -
Tpr3g3228 554 Gene3D GOLD domain 453 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3228 Tpr-Chr3 35451822 35455409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3228 231 432 Acyl Lipid Metabolism Gene Families AT1G55840 29.439 5.29e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3228 - - gmx:100805585 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3228 3 35451822 35455409 Tpr3g3228 3 35451822 35455409 ECH
Tpr3g0755 3 7207287 7210982 Tpr3g3228 3 35451822 35455409 PCT