Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3223 ATGGCAGCTGAGTTAGTCAATGCTGCAACGAGCGAAAAATTGGCTGAAACTGATTGGGCAAAAAATATTGAAATATGCGAGCTGGTTGCACGTGATAAAAGGCAAGCTAGAGATGTTGTTAAAGCTATCAAGAAGAAACTCGGCAGCAAACACCCCAATACTCAACTTTATGCTGTCACGTTGCTGGAGATGTTGATGAACAATACTGGAGAGCATATTCATGAGCAGGTGATTGATGTCGGAGTTATTCCTATTCTTGTGAAAATTGTGAAGAAAAAGTCTGATTTGCCTGTGAGGGAGAGGATATTTCTCCTACTAGATGCTATGCAATCATCCCTCGGTGGTGCTTCTGGAAAATTTCCTCAGTATTATAATGCATATTATGATTTGGTGAATGCTGGAGTGCAGTTTCCTCAAAGTGGTCAAGTGGTCCAATCAAATCATGCTAGTTCACAACCTAGCAGGACCGGTAGTGTACCAAACAGGGAGCAGGCGTCACCTAGACATGAAGCGGTTATACCGCAAGCAGAGTCCCAAACAGTTCCTGAATCTAGCATCATTCAAAAGGCTGGTAATGCATTGGAAGTTTTAAATGAAGTCCTTGATGCTGTTGATGCTCAAAATCCTCAGGGAGCAAGTGATGAATTCACCCTTGACCTTGTAGAACAATGTTCGTTTCAGAAGCAAAGGGTAATGCATCTTGTGATGGCTTCTCGAGATGAGAGGATAGTTTCTCGAGCAATTGAATTGAATGATCAGCTTCAGAAAGTTCTTGCAAGACATGAAGACCTTGTTTCTGGAAGAGCTACAAAGCCTGCTAATGAACATGTTCCGAAAGTTATACCAAGACGCCATGACGTTGTATCTGGCAGAGCTACAACAACTGCTAATGAACAGTTTCCGAAAGTTCTACCAAGACGCGATGACGTTGTATCTGTCAGAGCGACAACAACTGCTAACGAACAGTTTCCAAAAGTTCTTCCAAGACGCAATGACGTTGTATCTGGCAGAGCTACACCAACTGCTATTACTAGTTTTGATCATGATGAATCAGAGGAGGAAGAGGAGCCTGAACAGTTAGTACGAAGATTACGCAAAGGGAAGGCTTGTGCAAGGCCTGAAGACGAAGAAACTGAAACAGACATCTCTCGCATGCGTTTGAATGGGGAAAGACTCAATCGTCCTTTAATACGGCCACTGTCCGTAGAACCATCTCGAGAAGCATACAGTCCTGCTCCTCAACCGGCTTTAATCCCACCTCCACGTCCGAAACAGAACGGGGAGCTTCCTCCCGTGGCAATTCCACCGCCACCTGCAAAACACATGGAGAGGGAGAGGTTTTTTCAGGAAAACAAGGATGCTTCTAATGTGTCTGGCCACATGAGAGGTCTCTCTTTACATAGTCGTAACAGCTCTCACAGTGGAAGCTTTGATTTTAGTGACTGA 1446 0.4419 MAAELVNAATSEKLAETDWAKNIEICELVARDKRQARDVVKAIKKKLGSKHPNTQLYAVTLLEMLMNNTGEHIHEQVIDVGVIPILVKIVKKKSDLPVRERIFLLLDAMQSSLGGASGKFPQYYNAYYDLVNAGVQFPQSGQVVQSNHASSQPSRTGSVPNREQASPRHEAVIPQAESQTVPESSIIQKAGNALEVLNEVLDAVDAQNPQGASDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIELNDQLQKVLARHEDLVSGRATKPANEHVPKVIPRRHDVVSGRATTTANEQFPKVLPRRDDVVSVRATTTANEQFPKVLPRRNDVVSGRATPTAITSFDHDESEEEEEPEQLVRRLRKGKACARPEDEETETDISRMRLNGERLNRPLIRPLSVEPSREAYSPAPQPALIPPPRPKQNGELPPVAIPPPPAKHMERERFFQENKDASNVSGHMRGLSLHSRNSSHSGSFDFSD* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3223 481 SUPERFAMILY GAT-like domain 145 268 - -
Tpr3g3223 481 Pfam GAT domain 194 267 IPR004152 GO:0035091|GO:0043130
Tpr3g3223 481 Gene3D - 176 274 IPR038425 -
Tpr3g3223 481 MobiDBLite consensus disorder prediction 413 438 - -
Tpr3g3223 481 Gene3D - 2 136 IPR008942 -
Tpr3g3223 481 PANTHER TOM1-LIKE PROTEIN 1 274 IPR044836 GO:0035091|GO:0043130|GO:0043328
Tpr3g3223 481 PANTHER TOM1-LIKE PROTEIN 303 481 IPR044836 GO:0035091|GO:0043130|GO:0043328
Tpr3g3223 481 Pfam VHS domain 5 113 IPR002014 GO:0035091|GO:0043130
Tpr3g3223 481 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 303 481 - -
Tpr3g3223 481 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 1 274 - -
Tpr3g3223 481 MobiDBLite consensus disorder prediction 142 182 - -
Tpr3g3223 481 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Tpr3g3223 481 MobiDBLite consensus disorder prediction 402 481 - -
Tpr3g3223 481 CDD VHS 2 130 - -
Tpr3g3223 481 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Tpr3g3223 481 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Tpr3g3223 481 SUPERFAMILY ENTH/VHS domain 4 138 IPR008942 -
Tpr3g3223 481 MobiDBLite consensus disorder prediction 142 163 - -
Tpr3g3223 481 MobiDBLite consensus disorder prediction 452 481 - -
Tpr3g3223 481 CDD GAT_GGA_like_plant 186 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3223 Tpr-Chr3 35403887 35409920 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3223 - - mtr:MTR_3g097280 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3223 3 35403887 35409920 Tpr3g3223 3 35403887 35409920 ECH
Tpr3g0758 3 7246099 7251635 Tpr3g3223 3 35403887 35409920 PCT