Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3203 ATGAAGTTAGAAAAATTGGGATTCTTCATTGTTCTACTCTTGTTGAGTTCATCTACTTCTTTAGCTTGGTTTGGTAGTAGCAAAAACAAAATTTCAACTGCAAATGGAAGAAACTCAATTCTTCCATATGAACAATCCTCTTCATCATCATCATCATCGTCGTCGTTGTCGCCTTCATTCTTAAACCGTTTTCGTTCTGGTTCATCGGTCGTGTTCCCGGTTCATGGAAATGTTTACCCTGTTGGGTTTTATAATGTGACTCTCAGCATTGGGCACCCACCAAGGCCATATTTTCTTGACATTGACACGGGTAGTGACCTAACATGGCTTCAATGTGATGCACCTTGCTCCCGTTGCTCTCAGACGCCCCATCCGCTTTACCGGCCTAGCAATGACTTGGTCCCCTGCAGACATCCCATGTGTGCATCCGTGCATCAGTCGGATAACTATGACTGTGAAGTCGAGCATCAGTGTGATTATGAAGTCGAGTATGCAGATCATTATTCATCCCTTGGTGTACTTGTTAATGATGTCTATGTTCTCAACTTTACAAATGGGGTCCAACTTAAAGTTCGTATGGCACTTGGATGTGGATATGATCAGATTTTTCCAGATTCGTCCTACCACCCCGTAGATGGAATGCTTGGCCTTGGCAGGGGAAAATCCAGCTTGATATCACAGTTGAATAGTCAGGGTTTGGTGAGAAATGTTGTTGGACATTGTTTGAGTGCACAAGGAGGAGGATACATCTTCTTTGGAGATGTTTATGATTCTTCTCGATTGGCTTGGACTCCAATGTCATCAAGAGATTCCAAACATTACTCGGCAGGGGCAGCTGAACTCACTTTTGGAGGGAAGAGGACTGGGTTTGGAAACCTTCTTGCTGTTTTTGACACTGGGAGTTCTTACACTTACTTCAACTCTAACGCTTATCAAGCACTAATTTCTTGGTTGACGAAGGAATTAGCTGGAAAGCCCATAAAAGAAGCACCTGAAGACCAAACTCTCCCTCTGTGTTGGTATGGAAAAAGACCTTTCAGAAGTGTATATGAAGTCAGAAAATACTTCAAGCCTATTGCGCTTGGTTTCCCGAGCAGTGGGAGAATGAAAGCCCAATTCGAAATCCCTCCTGAAGCATATCTGATTATATCGAACATGGGAAATGTTTGCTTGGGTATTCTAAACGGCTCTGAAGTAGGAATGGAGGGTCTGAACCTAATCGGAGACATATCCATGCTAGACAAAGTGATGGTATTTGACAATGAGAAGCAGTTGATTGGTTGGGCTCCGACAGATTGTAACCGAGTTCCAAAGTCCAGAGATGTCAGCATTTGA 1335 0.433 MKLEKLGFFIVLLLLSSSTSLAWFGSSKNKISTANGRNSILPYEQSSSSSSSSSSLSPSFLNRFRSGSSVVFPVHGNVYPVGFYNVTLSIGHPPRPYFLDIDTGSDLTWLQCDAPCSRCSQTPHPLYRPSNDLVPCRHPMCASVHQSDNYDCEVEHQCDYEVEYADHYSSLGVLVNDVYVLNFTNGVQLKVRMALGCGYDQIFPDSSYHPVDGMLGLGRGKSSLISQLNSQGLVRNVVGHCLSAQGGGYIFFGDVYDSSRLAWTPMSSRDSKHYSAGAAELTFGGKRTGFGNLLAVFDTGSSYTYFNSNAYQALISWLTKELAGKPIKEAPEDQTLPLCWYGKRPFRSVYEVRKYFKPIALGFPSSGRMKAQFEIPPEAYLIISNMGNVCLGILNGSEVGMEGLNLIGDISMLDKVMVFDNEKQLIGWAPTDCNRVPKSRDVSI* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3203 444 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190|GO:0006508
Tpr3g3203 444 PRINTS Pepsin (A1) aspartic protease family signature 295 306 IPR001461 GO:0004190|GO:0006508
Tpr3g3203 444 PRINTS Pepsin (A1) aspartic protease family signature 405 420 IPR001461 GO:0004190|GO:0006508
Tpr3g3203 444 Gene3D Acid Proteases 254 437 IPR021109 -
Tpr3g3203 444 PANTHER ASPARTYL PROTEASES 5 438 IPR001461 GO:0004190|GO:0006508
Tpr3g3203 444 ProSiteProfiles Peptidase family A1 domain profile. 84 429 IPR033121 -
Tpr3g3203 444 SUPERFAMILY Acid proteases 76 436 IPR021109 -
Tpr3g3203 444 Pfam Xylanase inhibitor C-terminal 295 429 IPR032799 -
Tpr3g3203 444 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 295 306 IPR001969 GO:0004190|GO:0006508
Tpr3g3203 444 Pfam Xylanase inhibitor N-terminal 84 254 IPR032861 -
Tpr3g3203 444 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 438 - -
Tpr3g3203 444 Gene3D Acid Proteases 62 253 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3203 Tpr-Chr3 35201206 35204674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3203 52 439 Miscellaneous Gene Families AT1G44130 52.174 1.71e-147 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3203 - - gmx:100812524 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3203 3 35201206 35204674 Tpr3g3203 3 35201206 35204674 ECH
Tpr3g0787 3 7484594 7488032 Tpr3g3203 3 35201206 35204674 ECH