Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3160 ATGGATTCGAGTTCGAATCAGGAATTCGATTATTTGTTCAAATTATTGATGATTGGTGATTCCGGAGTTGGCAAGAGTAGTCTCCTCCTCTGTTTCACCGCTGATGCTTTCGAAGATCTTTCTCCTACAATTGGTGTTGATTTTAAGGTCAAATATGTCACTGTGGAAGGTAAAAAGTTGAAGCTTGCCATTTGGGATACAGCTGGTCAAGAGAGATTCAGAACACTAACGAGTTCTTATTACCGAGGTGCACAAGGGATCATTATGGCTTATGATGTTACTCGGCGAGATACATTTACAAATCTCTCTGAGGTATGGGCTAAGGAAGTAGAACTTTATTCAACAAATCCGGATTGCATCAAGATGCTTGTTGGAAATAAAGTGGATAAGGAGAGTGATAGAGCTGTGACAAAGAAAGAGGGAACAGACTTTGCAAGGGAATATGGTTGCCTATTTATTGAATGCAGTGCTAAAACTCGGGTTAACGTACAACATTGCTTTGAAGAGCTTGTTTTGAAGATTTTGGACACACCTAGCCTCTTAGCCGAGGGTTCGAAAGGGAACAAAAAGAACATTTTTAAGGACAAGGCACTCCAGTCTGATTCATCCGCAAGTAGTTGTTGCTAA 627 0.4051 MDSSSNQEFDYLFKLLMIGDSGVGKSSLLLCFTADAFEDLSPTIGVDFKVKYVTVEGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMAYDVTRRDTFTNLSEVWAKEVELYSTNPDCIKMLVGNKVDKESDRAVTKKEGTDFAREYGCLFIECSAKTRVNVQHCFEELVLKILDTPSLLAEGSKGNKKNIFKDKALQSDSSASSCC* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3160 208 SMART ran_sub_2 18 207 - -
Tpr3g3160 208 Gene3D - 5 208 IPR027417 -
Tpr3g3160 208 SMART rab_sub_5 13 177 - -
Tpr3g3160 208 PANTHER SMALL GTPASE FAMILY RAB PROTEIN 1 208 - -
Tpr3g3160 208 SMART ras_sub_4 10 177 - -
Tpr3g3160 208 ProSiteProfiles small GTPase Ras family profile. 3 208 IPR001806 GO:0003924|GO:0005525
Tpr3g3160 208 PRINTS Transforming protein P21 ras signature 13 34 - -
Tpr3g3160 208 PRINTS Transforming protein P21 ras signature 35 51 - -
Tpr3g3160 208 PRINTS Transforming protein P21 ras signature 53 75 - -
Tpr3g3160 208 PRINTS Transforming protein P21 ras signature 117 130 - -
Tpr3g3160 208 PRINTS Transforming protein P21 ras signature 152 174 - -
Tpr3g3160 208 ProSiteProfiles small GTPase Rho family profile. 6 175 - -
Tpr3g3160 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 183 IPR027417 -
Tpr3g3160 208 CDD Rab18 13 174 - -
Tpr3g3160 208 SMART rho_sub_3 15 177 IPR001806 GO:0003924|GO:0005525
Tpr3g3160 208 ProSiteProfiles small GTPase Rab1 family profile. 8 208 - -
Tpr3g3160 208 Pfam Ras family 14 175 IPR001806 GO:0003924|GO:0005525
Tpr3g3160 208 PANTHER DRAB5-RELATED 1 208 - -
Tpr3g3160 208 SMART arf_sub_2 1 178 - -
Tpr3g3160 208 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3160 Tpr-Chr3 34796863 34802888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3160 14 167 EF-hand Containing Proteins AT5G27540 25.625 2.87e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3160 K07910 - gmx:100779729 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0819 3 7692400 7695852 Tpr3g3160 3 34796863 34802888 PCT