Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0819 ATGGATTCGAGTTCGGGGCAGCAAGAATTCGATTATTCTTTCAAATTGTTAATGATTGGTGATTCTGGTGTTGGTAAAAGTTGTCTTCTTCTCAGGTTTACCTCCGATGATTTTCAAGATCTCTCCCCAACCATTGGTGTTGATTTTAAGGTCAAATATTTGACGATGGATGGTAAAAACCTTAAGCTTGCCGTTTGGGATACTGCTGGTCAGGAGAGATTTAGAACACTCACAAGTTCTTACTATCGAGGGGCGCAAGGAATCATCATGGTTTATGACGTAACCCGGCGAGAAACATTTACAAATCTATCTGAAATATGGGCAAAGGAAATAGACCTCTATTCAACAAATCAAGACTGCATGAAGATGCTTGTTGGAAACAAAGTAGATAAGGAGGGTGATAGAGCTGTGACAAAGAAAGAGGGAATAGACTTTGCTCGGGAATATGGTTGCCTTTTTATCGAATGCAGTGCTAAAACTCGAGTGAACGTGCAGCAATGTTTTGAAGAGCTTGTTTTGAAGATTCTTGATACACCTAGCCTCTTAGCTGAGGGCTCTAAGGGGGTAAAAAAGAACCTTTTTAAGGACAAGCCAGCCCAGTCAGATGCATCCACAGGCGGTTGTTGCTGA 630 0.4159 MDSSSGQQEFDYSFKLLMIGDSGVGKSCLLLRFTSDDFQDLSPTIGVDFKVKYLTMDGKNLKLAVWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEIWAKEIDLYSTNQDCMKMLVGNKVDKEGDRAVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGVKKNLFKDKPAQSDASTGGCC* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0819 209 Pfam Ras family 15 176 IPR001806 GO:0003924|GO:0005525
Tpr3g0819 209 ProSiteProfiles small GTPase Arf family profile. 7 176 - -
Tpr3g0819 209 ProSiteProfiles small GTPase Rab1 family profile. 9 209 - -
Tpr3g0819 209 SMART arf_sub_2 1 179 - -
Tpr3g0819 209 Gene3D - 7 209 IPR027417 -
Tpr3g0819 209 SMART ran_sub_2 19 204 - -
Tpr3g0819 209 SMART rab_sub_5 14 178 - -
Tpr3g0819 209 TIGRFAM small_GTP: small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Tpr3g0819 209 SMART rho_sub_3 16 178 IPR001806 GO:0003924|GO:0005525
Tpr3g0819 209 PANTHER DRAB5-RELATED 1 209 - -
Tpr3g0819 209 ProSitePatterns Sigma-54 interaction domain ATP-binding region A signature. 16 29 IPR025662 -
Tpr3g0819 209 ProSiteProfiles small GTPase Ras family profile. 6 209 IPR001806 GO:0003924|GO:0005525
Tpr3g0819 209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 181 IPR027417 -
Tpr3g0819 209 PRINTS Transforming protein P21 ras signature 14 35 - -
Tpr3g0819 209 PRINTS Transforming protein P21 ras signature 36 52 - -
Tpr3g0819 209 PRINTS Transforming protein P21 ras signature 54 76 - -
Tpr3g0819 209 PRINTS Transforming protein P21 ras signature 118 131 - -
Tpr3g0819 209 PRINTS Transforming protein P21 ras signature 153 175 - -
Tpr3g0819 209 ProSiteProfiles small GTPase Rho family profile. 7 176 - -
Tpr3g0819 209 CDD Rab18 14 175 - -
Tpr3g0819 209 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 209 - -
Tpr3g0819 209 SMART ras_sub_4 11 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0819 Tpr-Chr3 7692400 7695852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0819 13 168 EF-hand Containing Proteins AT5G27540 25.767 1.56e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0819 K07910 - gmx:100787603 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0819 3 7692400 7695852 Tpr3g3160 3 34796863 34802888 PCT