Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3054 ATGGCTCGAGTTCAATTCTCCATGGGAGCAATTTGTTTCATACTTGTCCTAGCTTATGGCACCCTAAAATGTGTCCAAGGAGCAGAATCTATACCAGGTCTTGGTATCAATTGGGGTGCTCTTGCATCACACCCTATGAGTCCTAGCATTGTTGCAAATATGTTGAGAGATAATGGAATTAAGAAGGTAAAACTTTTTGATGCAGATTCTTGGATCGTTAAGGCTTTTTCTGGTATGGACATTGAAGTCATGGTCGGAATTCCTAATGATCAACTGAGTAAATTTGCTAGCAGTAGTTCGGATGCAGAAGATTGGGTAAAAATAAATGTCACCAAACATCTTCATAATGGGGGTGTGAATATCAGATACGTATCAGTTGGAAATGAACCATTCTTGAAAAGTTATGGTTCTGCATATGTGCAGACAACATTCCCGGCTATGCAAAATATTCAAAAAGCTCTTGATAAGGCTGGGCATGGAGACATAGTAAAGGTGACTACAGCTTTGAATGCAGATGTTTATGCGTCTAATTCAAACAAACCATCAGATGGAGATTTTCGAGATGACATTCGTGATGTTATTAAACAAATACTTGAATTTCTACACGAAAGGAATTCGCCATTTCTCGTCAACATATACCCTTTCCTAAGTCTATATCAAAGTGAAGGTTTTCCAGAAGATTTTGCATTCTTTGATAACCAAAGCATGACAATTAGTGACAATAATACACAATATAGCAATGTGTTTGATGCAAATTTAGATACTCTTGTTTGGGCATTAAAAAAGGCCGGTTATGGAGACCTTAAAATTGTTGTTGGTGAAATTGGTTGGCCAACTGATGGTAACAAACATGCTAATGCTAACAATGCAAAAAGATTTTACCAAGGATTTCTTAAAAACATGGCTAGCAAAAAAGGAACTCCGATGCTCCCCGGACCAATGGATGCTTATCTATTTTCTCTTTTTGATGAGGATTTAAAGAGTATTGCACCTGGTTTTTTCGAACGTCATTGGGGAATTTTTCGCTACGATGGAAAGGCGAAGTTTCCTATAGATTTTTCTGGTAACGGAGAAGAAAAATGGCCACAAGAAGCAAAAGGTGTTAAGTACCAAGAACATAAATGGTGTGTCCTAAGCGCAGATGTTAAGAATTATTCTTTGGTGCCAGGGGCATTAGACTATGCTTGTGCTGGTGCTGACTGTACAAGTTTAGGATATGGTTGTACTTGTGATAATTTGGGATTAGCTGGTAATGCATCTTATGCTTTTAACCAATTTTTTCAAGCAAGAGATCAAAGTGTTGAGGCATGTGATTTTAATGGAATGGGTAGTATTGTAACAGAGGATCCATCAAAGGGAACATGCTTATTCCCTATAGAAATTGAGAGCAGCGGAGTTATAGTAACATCAATGCGTATGGTGACAATCCTTTTAATTGGATTGTCATTATTTTTTATAACATTGTGA 1467 0.3742 MARVQFSMGAICFILVLAYGTLKCVQGAESIPGLGINWGALASHPMSPSIVANMLRDNGIKKVKLFDADSWIVKAFSGMDIEVMVGIPNDQLSKFASSSSDAEDWVKINVTKHLHNGGVNIRYVSVGNEPFLKSYGSAYVQTTFPAMQNIQKALDKAGHGDIVKVTTALNADVYASNSNKPSDGDFRDDIRDVIKQILEFLHERNSPFLVNIYPFLSLYQSEGFPEDFAFFDNQSMTISDNNTQYSNVFDANLDTLVWALKKAGYGDLKIVVGEIGWPTDGNKHANANNAKRFYQGFLKNMASKKGTPMLPGPMDAYLFSLFDEDLKSIAPGFFERHWGIFRYDGKAKFPIDFSGNGEEKWPQEAKGVKYQEHKWCVLSADVKNYSLVPGALDYACAGADCTSLGYGCTCDNLGLAGNASYAFNQFFQARDQSVEACDFNGMGSIVTEDPSKGTCLFPIEIESSGVIVTSMRMVTILLIGLSLFFITL* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3054 488 SUPERFAMILY (Trans)glycosidases 34 353 IPR017853 -
Tpr3g3054 488 Gene3D - 369 463 - -
Tpr3g3054 488 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 3 471 IPR044965 GO:0004553|GO:0005975
Tpr3g3054 488 SMART X8_cls 374 457 IPR012946 -
Tpr3g3054 488 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3 471 - -
Tpr3g3054 488 ProSitePatterns Glycosyl hydrolases family 17 signature. 268 281 IPR000490 GO:0004553|GO:0005975
Tpr3g3054 488 Pfam X8 domain 374 443 IPR012946 -
Tpr3g3054 488 Pfam Glycosyl hydrolases family 17 34 353 IPR000490 GO:0004553|GO:0005975
Tpr3g3054 488 Gene3D Glycosidases 33 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3054 Tpr-Chr3 33052689 33054498 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3054 28 463 Miscellaneous Gene Families AT5G64790 54.128 1.82e-179 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3054 - - gmx:100794658 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3331 1 37651028 37654914 Tpr3g3054 3 33052689 33054498 PCT