Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3331 ATGGAGTTGAAGGAAGGTGGAAAATTTACTATGTGTTTTGTTGTTCTTATTTTCTTTGATACATCATTGTTGGAAGTTGGTGGAATTGGAGTAAATTGGGGAACACAATCAACACACCCTTTACCACCATCTACTGTGGTGAAAATGCTAAAGGACAATGGTATTCAAAAAGTTAAACTTTTTGATGCTGATCCTAATATTCTTGATGCTTTGAAGAAATCTGGGATTCAGGTTATGGTTGGTATACCAAATGATTTGCTTTATACTATGGCTAATAGTTTTCAAGCAGCTCAAAAATGGGTTGCTAAGAATGTTTCAGCACATGTTTCATCTGGTGGAGTAGATATCAGGTATGTCGCTGTGGGAAACGAACCTTTTTTGTCGACTTACAACGGCACCTTCGAATCCACAACATTCCCTGCTCTTCAAAATATCCAATCAGCTCTTGTAAAAGCTGGTTTGGGAAATTCAGTCAAAGTCACTGTCCCTTCGAATGCCGATGTGTATGAGAGCCTATCAAGTAACCCTTCCGATGGCGACTTCAGGGCAAACATCCGTGGTCTCATGATTCAGATTGTCAAGTTCTTGAGTCAGAACAATGCTCCATTTACAGTGAACATTTATCCTTTTATCAGTCTTTATGAAGATCCCAATTTTCCTACCGACTTTGCATTTTTCAACGGTTTTAGTGCGCCTTTAAACGACAACGGAAAGATCTACGACAATGTCTTTGATGCTAACTACGATACTCTAGTATCGGCATTGAACAAGAACGGTTTCGGTAACATGCCTATAATTGTAGGAGAAATTGGTTGGCCTACAGACGGAGACAGAAACGGAAATCTTCAACTCGCACAACGTTTTAACCAAGGCTTCATGACTCGGTTTATTGCTGGAAAGGGGACTCCAATGAGACCTGGTCCGCTAGACGCATACCTGTTTAGTTTAGTAGACGAAGACAACAAAAGCATTCAGCCTGGTAACTTTGAACGACATTGGGGATTGTTTTACTTTGACGGACGACCAAAATATCAGCTCAGCATTGGATCAAGAATCACTGGATTAGTAGGTGCTACCGGAGTAGCACATCTTCCCAAAAAGTGGTGTATTTTGAAACCCTCGGCGAACCTGAACAGTGATCAAGTTGCGCCAAGTGTGTCTTATGCTTGTCAGAATGCAGATTGCACTAGTCTTGGGTATGGCACTTCGTGCGGCGGTTTAGATGTTCGCGGTAATATCTCATATGCGTTTAATAGCTACTATCAGGTGAATGATCAGGTCGATGGTGCTTGCAAATTTCCCGGTCTTTCCACTGTTACTGACAGAGATCCTTCAACCCCAGATTGCACATTCCAAATCATGATCCAGACTGATTCTGCTGGAAAAATGGGGTCTCTTAGAATAATACAGTTTGTATTTCTTTTTCTTGTTTTTCTATAA 1440 0.4097 MELKEGGKFTMCFVVLIFFDTSLLEVGGIGVNWGTQSTHPLPPSTVVKMLKDNGIQKVKLFDADPNILDALKKSGIQVMVGIPNDLLYTMANSFQAAQKWVAKNVSAHVSSGGVDIRYVAVGNEPFLSTYNGTFESTTFPALQNIQSALVKAGLGNSVKVTVPSNADVYESLSSNPSDGDFRANIRGLMIQIVKFLSQNNAPFTVNIYPFISLYEDPNFPTDFAFFNGFSAPLNDNGKIYDNVFDANYDTLVSALNKNGFGNMPIIVGEIGWPTDGDRNGNLQLAQRFNQGFMTRFIAGKGTPMRPGPLDAYLFSLVDEDNKSIQPGNFERHWGLFYFDGRPKYQLSIGSRITGLVGATGVAHLPKKWCILKPSANLNSDQVAPSVSYACQNADCTSLGYGTSCGGLDVRGNISYAFNSYYQVNDQVDGACKFPGLSTVTDRDPSTPDCTFQIMIQTDSAGKMGSLRIIQFVFLFLVFL* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3331 479 Pfam X8 domain 367 437 IPR012946 -
Tpr1g3331 479 SMART X8_cls 367 451 IPR012946 -
Tpr1g3331 479 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 14 459 IPR044965 GO:0004553|GO:0005975
Tpr1g3331 479 ProSitePatterns Glycosyl hydrolases family 17 signature. 263 276 IPR000490 GO:0004553|GO:0005975
Tpr1g3331 479 Gene3D Glycosidases 28 353 - -
Tpr1g3331 479 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 14 459 - -
Tpr1g3331 479 Gene3D - 365 462 - -
Tpr1g3331 479 Pfam Glycosyl hydrolases family 17 29 347 IPR000490 GO:0004553|GO:0005975
Tpr1g3331 479 SUPERFAMILY (Trans)glycosidases 29 347 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3331 Tpr-Chr1 37651028 37654914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3331 7 479 Glycoside Hydrolase AT4G31140 66.808 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3331 K19893 - gmx:100790297 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3331 1 37651028 37654914 Tpr3g3054 3 33052689 33054498 PCT
Tpr7g0529 7 4469859 4473235 Tpr1g3331 1 37651028 37654914 PCT