Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2223 ATGAACAAACCTCCACGAGAAGATCATCATGAACGTAACAACACTGTTACTACTTCTACTACTCTCGACTCCAGATTCAGCCAGACTCTCAAAAACGTTCAAGGGTTACTCAAAGGTCGTAGCATGCCCGGTAAAGTATTGATGAGCAGAAGGTCTGAACCTTCTGATAACCTTAACTTAAAGGTATCCTCAACGTACTTCAAAAGGAGTTTCTCACACAATGATGCTGGCACAAGTGATCACATATCTGGTGCAGTAGAGGAGGAAGTTCAGAGTACAAGTAAACCAGTCAGCATTGCTAATGTTAGTAGGTTAAAAATATCAACCTCCCTTGGGGAAAGGGAGAACTTATCTGACGACTTCCGCAAGTATACCATGGGCGCTAGAGCTACCGATTCGGCAAAAGTTACAAAGTTCACTAAGGTGCTTTCTGGAACAGTGGTTATATTAGACAAATTGCGTGAATTAGCTTGGAGTGGTGTTCCAGACTACATGCGTCCTAAAGTGTGGAGACTCCTCTTGGGATATGAACCACCTAATTCAGATAGAAAGGAGGGAGTCTTGAGAAGGAAGCGTGGAGAGTATCTTGATTGTATTTCTCAGTATTATGATATTCCTGATTCAGAACGTTCAGATGACGAGGTCAGCATGCTTCGCCAGATTGCCGTTGATTGTCCAAGAACTGTACCCGATGTTCCTTTCTTCCAGCAACAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGCATAAATGATCTCGTTACACCCTTTTTAGTTGTTTTTATATCAGAATACTTAGAAGGGGGTATAGATGATTGGTCCATGTCTGATTTATCGTCAGACAAAATCTCTAATATAGAGGCTGACTGCTACTGGTGTTTGACAAAGTTGCTTGATGGTATGCAAGACCATTACACATTTGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAATTAAAGGAATTGGTCAGGAGGATCGATGAGCCTGTTACACAACATATAGAGGATCAGGGACTTGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTGATCCGCGAGATACCCTTCAATCTCATCACACGCCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTCGTGTATATATTTGCTAGTTTTCTTCTAACGTGGTCAGACAAGCTGCAGGGCTTGGAATTCCAGGAGTTGGTAATGTTCCTTCAACACCTTCCAACTCAGAAATGGACTCACCAGGACCTCGAGATGGTGCTTTCCCGGGCATTTATATGGCATAGCATGTTCAACAACTCTCCAAGTCATTTCGCTAGCTGA 1374 0.4279 MNKPPREDHHERNNTVTTSTTLDSRFSQTLKNVQGLLKGRSMPGKVLMSRRSEPSDNLNLKVSSTYFKRSFSHNDAGTSDHISGAVEEEVQSTSKPVSIANVSRLKISTSLGERENLSDDFRKYTMGARATDSAKVTKFTKVLSGTVVILDKLRELAWSGVPDYMRPKVWRLLLGYEPPNSDRKEGVLRRKRGEYLDCISQYYDIPDSERSDDEVSMLRQIAVDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFISEYLEGGIDDWSMSDLSSDKISNIEADCYWCLTKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVTQHIEDQGLEFLQFAFRWFNCLLIREIPFNLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQGLEFQELVMFLQHLPTQKWTHQDLEMVLSRAFIWHSMFNNSPSHFAS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2223 457 SMART tbc_4 157 413 IPR000195 -
Tpr3g2223 457 MobiDBLite consensus disorder prediction 1 20 - -
Tpr3g2223 457 Pfam Rab-GTPase-TBC domain 164 408 IPR000195 -
Tpr3g2223 457 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 140 347 IPR035969 -
Tpr3g2223 457 Gene3D - 133 186 - -
Tpr3g2223 457 ProSiteProfiles TBC/rab GAP domain profile. 160 387 IPR000195 -
Tpr3g2223 457 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 323 445 IPR035969 -
Tpr3g2223 457 Gene3D - 322 457 - -
Tpr3g2223 457 PANTHER GTPASE-ACTIVATING PROTEIN GYP1-LIKE 9 454 - -
Tpr3g2223 457 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 9 454 - -
Tpr3g2223 457 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 197 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2223 Tpr-Chr3 20838298 20849745 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2223 K20360 - gmx:100819281 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4793 7 56022429 56027535 Tpr3g2223 3 20838298 20849745 PCT