Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2056 ATGGCAACTAATGGAGATCACCAAACAACATCTAAGCAACCTCCCTTGCCATCTCCACTGCGTTTCTCCAAATTCTTTCAGTCGAACATGAGAATCCTAGTTACTGGAGGAGCTGGATTCATTGGTTCTCACCTTGTTGATAGATTGATGGAAAATGAAAAGAATGAGGTCATTGTTGCTGATAACTACTTCACTGGATCGAAGGACAACCTCAGAAAATGGATCGGTCATCCAAGATTTGAACTTATCCGTCATGATGTCACTGAGCCTTTGATGATTGAGGTGGATCAGATCTACCATCTCGCATGCCCTGCATCCCCTATTTTCTACAAATATAATCCTGTGAAGACAATAAAGACAAATGTGATTGGCACTCTGAACATGCTTGGGCTTGCAAAACGAGTTGGAGCAAGAATTTTGCTTACATCAACTTCGGAGGTATATGGTGATCCTCTTGAGCATCCTCAAACTGAGAACTATTGGGGCAATGTTAACCCTATTGGAGTTCGTAGCTGCTATGATGAGGGGAAACGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAGCATGGATTAGAAATTCGCGTTGCGAGAATCTTCAACACATATGGGCCGCGCATGAATATCGATGATGGACGTGTTGTAAGCAACTTCATTGCTCAAGCACTACGTGGTGAATCCTTGACGGTCCAATCTCCGGGAACGCAAACTCGCAGTTTCTGTTATGTCTCTGACCTGGTTGATGGTCTTATCCGTCTCATGGGAGGATCGGACACCGGTCCAATCAATCTTGGAAACCCAGGTGAATTCACAATGCTTGAACTTGCTGAGACAGTGAAGGAGCTTATTAATCCAGATGTGGAGATTAAGATAGTGGAGAACACTCCTGATGATCCAAGACAGAGAAAACCAGACATTACTAAAGCAACTGAAGTGCTTGGCTGGGAACCAAAGGTCAAGCTGCGTGATGGTCTTCCTCTTATGGAAGGAGATTTCCGTTTGAGGCTTGGAATCGAGAAGAATGCATAA 1032 0.4399 MATNGDHQTTSKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLRKWIGHPRFELIRHDVTEPLMIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQTENYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRVARIFNTYGPRMNIDDGRVVSNFIAQALRGESLTVQSPGTQTRSFCYVSDLVDGLIRLMGGSDTGPINLGNPGEFTMLELAETVKELINPDVEIKIVENTPDDPRQRKPDITKATEVLGWEPKVKLRDGLPLMEGDFRLRLGIEKNA* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2056 343 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 2 342 - -
Tpr3g2056 343 Pfam GDP-mannose 4,6 dehydratase 33 327 IPR016040 -
Tpr3g2056 343 Gene3D - 29 333 - -
Tpr3g2056 343 CDD UGD_SDR_e 30 334 - -
Tpr3g2056 343 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 25 331 IPR036291 -
Tpr3g2056 343 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 2 342 IPR044516 GO:0042732|GO:0048040|GO:0070403
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2056 Tpr-Chr3 18888325 18892741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2056 27 326 Miscellaneous Gene Families AT1G02000 24.179 8.63e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2056 K08678 - gmx:100790835 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2056 3 18888325 18892741 Tpr3g2056 3 18888325 18892741 ECH
Tpr7g4671 7 55043207 55047800 Tpr3g2056 3 18888325 18892741 ECH
Tpr3g2056 3 18888325 18892741 Tpr7g4472 7 53442243 53446817 PCT