Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1734 ATGGATTATCAGTATATTCTTGGAGGAATTCTTCTCGCTTCTAGTTTAGCATTTGTGTTTGTTTTGTATGGTTTTGGAGTAAAGAAGAAGGTAAGTACAGAAAGTGGTTCAAGTTCTATAGATGCAAAGATATCATCAGAAAATGGAATATGTTTACAAGAAGTTGAAGGAGAAACAGATATTATTATTGTAGGTGCTGGTGTTGCTGGTGCTGCTCTTGCTTATACACTTGGAAAGGATGGACGGCGAGTACATGTGATTGAAAGAGACTTAAGTGAACCTGATAGGATTGTGGGTGAATTGCTACAACCTGGTGGCTATCTAAAATTACTTGAGTTGGGTCTTGAGGATTGTGTGGATGAAATTGATGCTCAAAGGGTATTTGGTTATGCACTTTACAAGGATGGTAAAAATACAAAGCTATCTTATCCCTTGGAAAATTTTAACTCTGATGTATCGGGAAGAAGCTTTCACAACGGTCGTTTCATACAAAGAATGCGAGAAAAGGCCTCATCTCTTCCAAATGTAAAATTAGAGCAAGGGACAGTTACATCTTTACTCGAAGAAAATGGAACCATCAAAGGAGTGAACTACAAAACTAAAAGTGGAGAAGTGTTCACGGAAAAGGCTCCTCTCACCATAGTATGTGATGGTTGTTTTTCCAACTTGCGACGTTCTCTTTGTGATCCTAAGGTCGAAGTTCCCTCTCATTTTGTTGGATTGGTGTTGGAGAATTGTAATCTTCCATATGCAAACCATGGACATGTTATCTTGGGAGATCCTTCACCAATTTTGTTTTACCCTATAAGTAGTACCGAGATTCGATGTTTGGTTGATGTGCCCGGCCAAAAACTACCTTCCCTTGGTAATGGTGACATGGCACATTTTTTGAAAACAGTGGTAGCTCCTCAGGTTCCTCCAGAGTTGTATGCTTCTTTTATAGCAACAATTGATAAAGGAAACATAAGAAGCATGCCAAATAAAAGCATGCCTGCCTCACCTTATCCCACACCCGGAGCGCTTCTGATGGGAGACGCCTTCAATATGCGTCACCCTTTAACTGGAGGAGGAATGACCGTGGCTTTGTCTGACATTGTTGTGCTCAGGAATCTACTTAAGCCTCTACATAATCTGCATGATGCTTCTGCTCTTTGCAATTACCTCGAGTCATTCTACACTCTAAGAAAGCCAGTGGCATCTACAATAAACACATTAGCAGGTGCATTATACAAAGTGTTTTGTGCATCTCCTGATCCAGCTAGCATTGAAATGCGCCAAGCATGTTTTGATTATTTGAGCCTTGGAGGCGTTTTCTCAAATGGACCAATAGCTCTACTCTCCGGTCTAAATCCTCGTCCACTGAGCTTGGTTCTCCATTTCTTCGCAGTGGCAATATACGGTGTTGGCCGTCTGTTGATACCATTTCCTTCTCCTAAAAGAATGTGGATCGGAGCTAGATTGATTTCCGGTGCATCAGGTATCATTTTTCCTATTATCAAAGCTGAAGGAGTGAGACAAAAGTTTTTTCCAGCAAGTGTGCCAGCATACTACAGAATGCCTCCTGTCCATTAA 1572 0.4097 MDYQYILGGILLASSLAFVFVLYGFGVKKKVSTESGSSSIDAKISSENGICLQEVEGETDIIIVGAGVAGAALAYTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLLELGLEDCVDEIDAQRVFGYALYKDGKNTKLSYPLENFNSDVSGRSFHNGRFIQRMREKASSLPNVKLEQGTVTSLLEENGTIKGVNYKTKSGEVFTEKAPLTIVCDGCFSNLRRSLCDPKVEVPSHFVGLVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGNGDMAHFLKTVVAPQVPPELYASFIATIDKGNIRSMPNKSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHNLHDASALCNYLESFYTLRKPVASTINTLAGALYKVFCASPDPASIEMRQACFDYLSLGGVFSNGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQKFFPASVPAYYRMPPVH* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1734 523 PANTHER SQUALENE MONOOXYGENASE 1 523 IPR040125 GO:0004506|GO:0016126
Tpr3g1734 523 Pfam Squalene epoxidase 209 482 IPR013698 GO:0004506|GO:0016021|GO:0050660
Tpr3g1734 523 SUPERFAMILY FAD/NAD(P)-binding domain 58 434 IPR036188 -
Tpr3g1734 523 Gene3D - 50 413 IPR036188 -
Tpr3g1734 523 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 523 - -
Tpr3g1734 523 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 60 82 - -
Tpr3g1734 523 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 209 224 - -
Tpr3g1734 523 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 337 352 - -
Tpr3g1734 523 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 352 368 - -
Tpr3g1734 523 Pfam NAD(P)-binding Rossmann-like domain 63 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1734 Tpr-Chr3 15370215 15374914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1734 22 522 Miscellaneous Gene Families AT1G58440 76.541 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1734 K00511 - gmx:100800329 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1734 3 15370215 15374914 Tpr3g1734 3 15370215 15374914 ECH
Tpr3g1734 3 15370215 15374914 Tpr2g2518 2 30051226 30053910 PCT