Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1340 ATGGAAATGATGCTTTCTCGTTTACCTTACCATGATTCCCTCAAACTACTTGAGGCTGATATTCACCATGCCAATGCTTTGGCTGCTGCTATTCCAAGAGCAAAGGGTGGGAGTGTTTTCCAAATGAAATTGGTTTACAGTCAATTGGCTCCTCTTTTTCTGTTGTTGCTACAATGGATGGATTGTTCTTGTTCATGTTTTCTACATAGGTATCTCAACCTCTTCCATATAATTATATACAAGGTACATAATGATGGTAGACCAAGTATAACTTCTCATGGAAGAAAAGCAACCATCCAGGACTTTTATGCTGTTATATTGCCGTCTCTTCAGCGGCTTCATGGTAGTCTTGAGAAGTTGGAGATTTGTATGAAAGGGCACTCTAGCTTAGAAAGTTCAAGTTATGGCAAGAAGATGATTGAAGCAAATTCAAAACTAACCAATGTTGATTTGGAAAGAGAAGATGAATGTGGGATTTGCTTAGAACCATGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCTATGTGTATCAAATGCTACCGCAAGTGGAACACAAAGTCAGAGTCTTGTCCATTTTGTCGTGGTAGCATAAGAAGAGTAAATTCTGAGGATTTATGGGTACTCACTTGTAACGAAGATGTAGTCGATACTGAAACAGTTTCCAAAGAGGACTTGTTGCGATTCTATCTTTATATCAACAGCTTACCTAAAGATTATCCAGATGCACTTTTCTTAATGTATTATGAATACTTAATTTGA 762 0.3766 MEMMLSRLPYHDSLKLLEADIHHANALAAAIPRAKGGSVFQMKLVYSQLAPLFLLLLQWMDCSCSCFLHRYLNLFHIIIYKVHNDGRPSITSHGRKATIQDFYAVILPSLQRLHGSLEKLEICMKGHSSLESSSYGKKMIEANSKLTNVDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNTKSESCPFCRGSIRRVNSEDLWVLTCNEDVVDTETVSKEDLLRFYLYINSLPKDYPDALFLMYYEYLI* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1340 253 SMART ring_2 157 194 IPR001841 -
Tpr3g1340 253 Pfam Ring finger domain 155 195 IPR001841 -
Tpr3g1340 253 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
Tpr3g1340 253 SUPERFAMILY RING/U-box 147 200 - -
Tpr3g1340 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 206 IPR013083 -
Tpr3g1340 253 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Tpr3g1340 253 PANTHER RING FINGER PROTEIN 41, 151 4 253 - -
Tpr3g1340 253 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1340 Tpr-Chr3 11863624 11866198 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1340 - - gmx:100790422 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4725 2 52624548 52627105 Tpr3g1340 3 11863624 11866198 PCT