Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4725 ATGGCACTCATACCATACTACCTTTCTCGGTTACCTTATCAGGATTCCCTCCAAATACTTGAGGCTGATATTCAACAAGCTAATGCTTTGGCTGCTGCAATTCCAAGAGCTAGAGGAGGGACTCTTATTAAAATGAAATTGGTTTGCAATCAATTGGCTCCTCTTGTTTTGTTGTTTCTCCAATGGATGGATTGTTCTTGTGCTGGCTTTTTGCACAGTTATCTCAGCCTCTTTCACATACTTATATACAAAGAACCAAATGATGGTAGATCAATCATGTCTACTCGTGGTAGGAAAGCAACCATCAAGGACTTTTATGCCGTTATATTACCGTCTCTTCAACGACTTCACGGTAGCTTTGATGACAAGTTGGAAACTTGTGAAGATGGGAAGACGTGTTTAGAAGGTTCAAGTTGTGGTAATAAGGTAATTGAAGGAGATGGGAAACTAACAAATGTTGATTTGCAAAGAGAAGATGAATGTGGGATTTGCTTAGAGCCTTGTACCAAAATGGTTTTGCCTAATTGCTGTCACGCCATGTGCATCAAATGCTACCGCAAGTGGAACAGAAAGTCAGAGTCTTGTCCTTTTTGCCGCGGTAGCTTGAGGAGGGTTAATTCGGAGGATCTATGGGTATTAACTTGTGATGAAGATGTTGTTGATACTGAAACAGTTTCTAAAGAGGACTTGTTGCGTTTTTACCTCTATATCAACAAACTTCCCAAAGATAGCCCAGATGCACTTTTCCTAATGTATTATGAATACCTGATTTGA 774 0.3992 MALIPYYLSRLPYQDSLQILEADIQQANALAAAIPRARGGTLIKMKLVCNQLAPLVLLFLQWMDCSCAGFLHSYLSLFHILIYKEPNDGRSIMSTRGRKATIKDFYAVILPSLQRLHGSFDDKLETCEDGKTCLEGSSCGNKVIEGDGKLTNVDLQREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNRKSESCPFCRGSLRRVNSEDLWVLTCDEDVVDTETVSKEDLLRFYLYINKLPKDSPDALFLMYYEYLI* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4725 257 ProSiteProfiles Zinc finger RING-type profile. 161 199 IPR001841 -
Tpr2g4725 257 PANTHER RING FINGER PROTEIN 41, 151 6 257 - -
Tpr2g4725 257 Pfam Ring finger domain 159 199 IPR001841 -
Tpr2g4725 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 209 IPR013083 -
Tpr2g4725 257 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Tpr2g4725 257 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 257 - -
Tpr2g4725 257 SUPERFAMILY RING/U-box 152 203 - -
Tpr2g4725 257 SMART ring_2 161 198 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4725 Tpr-Chr2 52624548 52627105 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4725 - - mtr:MTR_3g086130 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4725 2 52624548 52627105 Tpr2g4725 2 52624548 52627105 ECH
Tpr2g4725 2 52624548 52627105 Tpr3g1340 3 11863624 11866198 PCT