Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1313 ATGCCTGGTTTTGTTGCTGGCAAGAAGATGTTTTCGAAGAAAAATATGAGTTTTTCCAATTTGGCGGATCAAAATATGTCAACTCTTTCGAAAGGTGATCATAGTATGAGGTCCGAGGCTCTGGATGACGCTGATGATGATGATGGCTTTATTCTTCCTGGACTTTCTGATGATGTTTCAAAGTATTGCCTTGCGCTTGTGCCTCGTTCTAACTTCCTAGCTATGGGCGATGTGTGTAAGAGATGGAGGCGTTTCATTCAAAGCAAAGAATTCATAACCGTGAGAAAATTGGCTGGGCAGCTTGAGGAATGGCTCTATATCTTAACAGCTGATAGTGAAGGAAAAGGAAGTCATTGGGAGGTTATGAATTCTTTTGGTCATAATCGCCGATCTCTTCCACCTATGCCTGGTCCAGGGAAGGCTGAGTTTGGTGTTGTGGTTCTTAATGGAAAGCTTCTTGTTATGGCTGGCTATTCATCCATTGGTGGAACTATTTCTGTTTTGGCAGAGGTTTACCAATATAATTCTAACCTCGACAGTTGGATCAGATTGTCGAACATGAATGTGGCTCGGTACAACTTTGCTTGTGCAGAAGTCAATGGCTTGGTTTATGCTGTTGGAGGATATGGAGCAGAAGGTGATAGTCTCTCAAGTGCCGAAGTCTATGATCCCGATACTGACAAGTGGACAATGATTGAGAGCTTACGTCGTCCAAGATGGGGTTGTTTTGCCTGTGGATTTGAGGGTAAGCTCTATGTGATGGGTGGAAGGTCAAGCTTTACAATTGGAAATTCCAAGTTTGTTGATGTTTATGACCCTGAGAAGCATACGTGGCGTGAGATGAAAAATGGGTGTGTCATGGTCACTGCTCACGCGGTACTAGAAAATAAGTTATTTTGTATGGAGTGGAAGAATCAACGGAAGTTATCGATATTTAATCCAGATGATAATTCATGGAAAATGGTACCGGTACCTCTGACGGGTAGTTCAAGTGTAGGTTTTAGATTTGGGATACTGAATGGTAAGCTTTTGCTGTTTTCATTGAAGGAAGATCCTACATATAGGACTTTGTTGTATGATCCAAATGCAGCGCCGGGGTGTGAGTGGGGGACTATTGATATAAAACCATCTGGTTTGTGCTTGTGTAGTGTTACTATCAAGGCCTGA 1167 0.425 MPGFVAGKKMFSKKNMSFSNLADQNMSTLSKGDHSMRSEALDDADDDDGFILPGLSDDVSKYCLALVPRSNFLAMGDVCKRWRRFIQSKEFITVRKLAGQLEEWLYILTADSEGKGSHWEVMNSFGHNRRSLPPMPGPGKAEFGVVVLNGKLLVMAGYSSIGGTISVLAEVYQYNSNLDSWIRLSNMNVARYNFACAEVNGLVYAVGGYGAEGDSLSSAEVYDPDTDKWTMIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKFVDVYDPEKHTWREMKNGCVMVTAHAVLENKLFCMEWKNQRKLSIFNPDDNSWKMVPVPLTGSSSVGFRFGILNGKLLLFSLKEDPTYRTLLYDPNAAPGCEWGTIDIKPSGLCLCSVTIKA* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1313 388 PANTHER KELCH REPEAT F-BOX PROTEIN 1 388 - -
Tpr3g1313 388 PANTHER OS02G0202900 PROTEIN 1 388 IPR045887 -
Tpr3g1313 388 Pfam Kelch motif 190 235 IPR006652 GO:0005515
Tpr3g1313 388 Pfam Kelch motif 242 282 IPR006652 GO:0005515
Tpr3g1313 388 Pfam Kelch motif 141 188 IPR006652 GO:0005515
Tpr3g1313 388 SUPERFAMILY Kelch motif 102 349 IPR015915 GO:0005515
Tpr3g1313 388 SMART kelc_smart 202 249 IPR006652 GO:0005515
Tpr3g1313 388 SMART kelc_smart 151 201 IPR006652 GO:0005515
Tpr3g1313 388 SMART kelc_smart 250 298 IPR006652 GO:0005515
Tpr3g1313 388 Pfam F-box domain 54 91 IPR001810 GO:0005515
Tpr3g1313 388 Gene3D - 89 384 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1313 Tpr-Chr3 11625361 11628230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1313 55 233 Miscellaneous Gene Families AT4G33900 27.273 1.08e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1313 - - gmx:100815474 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1313 3 11625361 11628230 Tpr3g1313 3 11625361 11628230 ECH
Tpr2g4681 2 52122293 52126070 Tpr3g1313 3 11625361 11628230 PCT