Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1028 ATGCATCAACTTGAAGAACTACTCATCATCTTTCTCCCATTCCTCATCGGTTTAATCCTAACATTCAAAACCTTCATCTCATTCACCACATGGATCTTCAACACGTGTCTCCGATCTGAAAAACACTTCATCAAATCCTACGGTTCATGGGCGTTAATCACCGGATCAACCGACGGAATCGGAAAAGCCTTATCCTATCAACTAGCAGAAAGAAATCTCAACCTAATTCTCGTAAGCAGAAATTCAAAAAAACTCGAAACAGTTAAAAACGAAATCAGTACCAAAAATCCTCACATTCAAATCAAAACCGTTACGATCGATTTTTCCGGCGACTTCACCGACGGTGTTCGAGAAATAGAAATTTTGGCCCGAGATTTAGATCTTGGAATTTTGATCAATAACGTTGGGATTTCATATCCGAAGGCTATGTTTTTTCATGAGGTGAAAGAGGAAACGTGGATGAAGATTGTTAGAGTGAATATTGAGAGTACGACGAGAATAACGAAAGCGGTTATCGGTGGAATGATGGAAAGGAAGAAGGGTAGTATCGTAAATATTGGATCTGGTGCTGCGGCGGTTGTGCCTTCGCATCCTCTGTTCACAATCTATGCTGCAACTAAAGCTTATGTAGATCAGTTTTCAAGATCTTTACATGTGGAGTATAAACAATATGGAATCCACGTGCAATGTCAGGTACCACTATATGTTGCGACGAACATGGTATCAAGGGTAGCATCTATTGGGAAAGATTCTTTTTTCATACCAACACCTGAAGGTTATGCAAAAGCTGCTATTCGTAAAATTGGATATGAACAAAGATGCACACCTTATTGGGCTCACTCAATTCAGTGGGCCTTTGCATGCTTAATCCCTAACCCACTTCTTGATTATTGGCGCATGTCTATTGGCTTGCGACGACGTAGGAATCACATGGATTAG 939 0.4047 MHQLEELLIIFLPFLIGLILTFKTFISFTTWIFNTCLRSEKHFIKSYGSWALITGSTDGIGKALSYQLAERNLNLILVSRNSKKLETVKNEISTKNPHIQIKTVTIDFSGDFTDGVREIEILARDLDLGILINNVGISYPKAMFFHEVKEETWMKIVRVNIESTTRITKAVIGGMMERKKGSIVNIGSGAAAVVPSHPLFTIYAATKAYVDQFSRSLHVEYKQYGIHVQCQVPLYVATNMVSRVASIGKDSFFIPTPEGYAKAAIRKIGYEQRCTPYWAHSIQWAFACLIPNPLLDYWRMSIGLRRRRNHMD* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1028 312 Pfam short chain dehydrogenase 50 244 IPR002347 -
Tpr3g1028 312 Gene3D - 43 280 - -
Tpr3g1028 312 CDD 17beta-HSD1_like_SDR_c 48 291 - -
Tpr3g1028 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 137 IPR002347 -
Tpr3g1028 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 181 189 IPR002347 -
Tpr3g1028 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Tpr3g1028 312 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 10 310 - -
Tpr3g1028 312 PRINTS Glucose/ribitol dehydrogenase family signature 50 67 IPR002347 -
Tpr3g1028 312 PRINTS Glucose/ribitol dehydrogenase family signature 126 137 IPR002347 -
Tpr3g1028 312 PRINTS Glucose/ribitol dehydrogenase family signature 175 191 IPR002347 -
Tpr3g1028 312 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Tpr3g1028 312 PRINTS Glucose/ribitol dehydrogenase family signature 224 241 IPR002347 -
Tpr3g1028 312 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 47 301 IPR036291 -
Tpr3g1028 312 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 190 218 IPR020904 GO:0016491
Tpr3g1028 312 PANTHER RH59310P 10 310 - -
Tpr3g1028 312 PIRSF 11-beta-HSD1 2 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1028 Tpr-Chr3 9349628 9354015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1028 11 307 Lipid Metabolism Gene Families AT1G24470 57.576 1.05e-123 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1028 K10251 - csin:114314729 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1028 3 9349628 9354015 Tpr3g1028 3 9349628 9354015 ECH
Tpr3g1028 3 9349628 9354015 Tpr2g4730 2 52685089 52687974 PCT