Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4730 ATGGATTCCTGCTGTATAATCAGTAAGCTCAAAACTCAACCTTTCTGGTTCCTACTTTTCTTCTCCCTCGGTCTCTTCACAATTCTCAGATTCACTCTCATTCTTCTCAACTGGGTCTATGTCAATTTTCTCAGACAACCCAAAAATCTCAAAAAGTATGGATCTTGGGCACTCGTTACTGGACCCACCGACGGCATTGGAAAAAGCTTCGCTTTTGAACTCGCTCGTAAAGGTTTGAACCTAATCCTTGTCGGTCGCAACCCCGACAAACTCAAAGACGTTTCAGATTCTGTTAAAGCTAAGTTCGGAAAAACCGAGGTTAAAACTGTTGTTGTTGATTTTGCCGGTGATCTTGATGAGGGTGTGAATAGAATTCGTGAAACGATTGAAGGGTTGGATATTGGGGTTTTGATTAATAACGTGGGAATTTCTTACCCTTATGCGAGGTTTTTTCATGAAGTTGATGAAGAGCTTTTGAAGAATTTGATTCAGGTTAATGTTGTTGGAACTACTAAGGTTACTCAAACTGTTTTACCTGGAATGATAAGGAGAAAAAAAGGAGCAATTGTTAATATTGGTTCTGGTGCTGCTATTGTTATTCCTTCTGATCCACTTTATGCTGTTTATGCTGCCACAAAAGCGTACATAGATCAATTTTCTAGATGTCTCTATGTTGAATACAAGAACAAAGGGATTGATGTGCAGTGTCAGGTTCCATTATATGTTGCAACAAAGATGGCATCAATCCGGAGATCTTCGTTTTTTGTTCCATCAACAGATGGTTATGCCAAAGCAGGTGTGAAATGGATCGGATATGAACCTCGTTGCACACCATACTGGCCCCATACCCTTCTTTGGGCCGTGGCTTGCTCGTTGCCTGAGTCTATAGTTGATGCTTGGCGCCTACGATTTTGTATCGGTATTAGAAAGAGGGGTCAGCTCAAAGAGTCAAGGAAGCAAGAATAA 966 0.4099 MDSCCIISKLKTQPFWFLLFFSLGLFTILRFTLILLNWVYVNFLRQPKNLKKYGSWALVTGPTDGIGKSFAFELARKGLNLILVGRNPDKLKDVSDSVKAKFGKTEVKTVVVDFAGDLDEGVNRIRETIEGLDIGVLINNVGISYPYARFFHEVDEELLKNLIQVNVVGTTKVTQTVLPGMIRRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKNKGIDVQCQVPLYVATKMASIRRSSFFVPSTDGYAKAGVKWIGYEPRCTPYWPHTLLWAVACSLPESIVDAWRLRFCIGIRKRGQLKESRKQE* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4730 321 PANTHER RH59310P 6 320 - -
Tpr2g4730 321 CDD 17beta-HSD1_like_SDR_c 54 296 - -
Tpr2g4730 321 Pfam short chain dehydrogenase 56 248 IPR002347 -
Tpr2g4730 321 PANTHER BETA-KETOACYL REDUCTASE 1-RELATED 6 320 - -
Tpr2g4730 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 143 IPR002347 -
Tpr2g4730 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 187 195 IPR002347 -
Tpr2g4730 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 209 228 IPR002347 -
Tpr2g4730 321 PIRSF 11-beta-HSD1 6 315 - -
Tpr2g4730 321 Gene3D - 50 268 - -
Tpr2g4730 321 PRINTS Glucose/ribitol dehydrogenase family signature 56 73 IPR002347 -
Tpr2g4730 321 PRINTS Glucose/ribitol dehydrogenase family signature 132 143 IPR002347 -
Tpr2g4730 321 PRINTS Glucose/ribitol dehydrogenase family signature 181 197 IPR002347 -
Tpr2g4730 321 PRINTS Glucose/ribitol dehydrogenase family signature 209 228 IPR002347 -
Tpr2g4730 321 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Tpr2g4730 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 54 311 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4730 Tpr-Chr2 52685089 52687974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4730 6 321 Lipid Metabolism Gene Families AT1G67730 63.291 1.41e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4730 K10251 - gmx:100814139 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1028 3 9349628 9354015 Tpr2g4730 2 52685089 52687974 PCT