Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0923 ATGTCATCGACATGTCCGATCGGTAATGATCAACCTATTGATCAATTGAAAGTTACTGAGCTGAATGATGAGCTTAAGAGAACGGAACTAGCTACGAAAGGTTTAAAGGAAGATTTGATAAACTGTTTGGATGAAGTTCTTGCCATTGAAAAGGAGAAGGATGATGTTAGTGGTTTCAATGGAAATGCTTCTGATACAGATGAAAAGGGTAACACTGCCAAAGTTCATCCAGTTGAAACAGGAAATGAAGAAATGATTCCGGAGGTTGTGAATAATGACAGTGGAAAGAGTGATATCACCAAGCTGGTTGGCAATGATTGTAGTGCAATGGCAGACCAAGTAGTGGATCATATGGACTTATCAGCTGATGCAGATTCTGCAAATGTGGCAGAGGACTTAGTTCACTCTTCTACTAAAGAGACCGCTGTGACAGTCTCCGAGAGTGTCTTAACAGAAGCAACAGTAGTCAGTGGTCAGGAGGATTCGTGTATTTCAGAACCACAGAATGGTCATGATCAGGATTCTGTAACCAAGCAGGTAAGCGAGGAGTCAAAGCCCCAGCTGGAGTGTGACATAAAGCCCCCGTGTGAGAATCTCACACCCGACTCTTTGCTTTCTGAAAATCAGGTATCTGAGGTCAACACTAGTTTAGGGTCACAAGTACAATCTGATTCTGTTTCTAGTAACTGTGTGTCGATTAATCAAAAGAATGAACTGAATGATACTATAATTGCTAATAATATCAATTTAGAACAAGAAATTGTTAGGTCAGAGATGGTGGAAGAACCATCATCCAAAATTGATGTCCCTGTTTATGATGAATTGCATTCAATGGATGTTGAAGAGCTAGACAAGAAAAAGGCATCTGTTGAGGAAAATAGCAGTAACAACAAAAGTCCAAGCCCGGACAAGACCAATAGCAGTGAAGATGTAGGTTATCCAGAAAAGTTAAACTTGGATAGAAGTTCTGGTGATGATTCCATGGAAGAGGATTTGCCGGAGAGCAAGCAATCTGATTCTAAGTTTAATGTTGATGAACTTGGAGTGAAGGGGGAAAGTGTTGAAAGGCCTATTGTGAAGGAGGAATGTGGTCCTGCTGTGGTGGGAGAAGGTCTATCAGAAAAAGGCGGTACCGACCACAATAATAATATTCCTGCTGTTTCCCTTGTCAAGAAACAAAAAATACATGATCGAATATCAGTTCGGGATAATCAGCCTAAAAAACGACAAAGAATGTGGAACTCTGAAACAGTTAAAGATTCAAATCCGCAAATGTCTACTGTCAGACCTGCTACTGCACCAAAGGGTGAGCCAAATGCTTTCAAGCGCAATTTATCTCGGTCTGATTCCTCAGCAATTAATGATGCGCCCAAAGAACGCTTTGTTCCACCATCACAAAGGCACCCAACTAATTCCCTCAGGATTGATCATTTCCTCCGACCTTTTACCTTGAAAGCAGTGCATGAACTACTTGACAAAACTGGGAATTTCACTAGTTTTTGGATGGACGAAATAAAAACCCATTGCTACGTCAGTTACTCAACTGTCGAAGAAGCCACTGAGACCCGAAATGCTGTTTATAATCTTCAATGGCCCCCACATGGTGGACGCCTTTTAGTTGCTGAGTATGTTGATCCCCAAGAAGTGCAAATGAAGCTAAGACCTCCTCCTCATGTTGCTGTTAACATTGATTCAACAGTTCCTCCTGAAACACCTACCTCGCTGCCAGAGCCTTCCTCCTGTCAGCACAGGGAGCAGCCTCCAGTTCCAGTCACATTTCCTCCTCCACCACCATTGTCACAGCTCCCGCCAGCAGCTAGAGAATGGCTTCCACCGCCACCAGCTAGAGAATGGCTTCCACCGCCACCAACTAGAGAATGGCTTCCACCGCCACCAACTAGAGAATGGCTTCCACCGCCACCAGCTAGAGAATGGCTTCCACCGCCGCCACTTTTGTCAGGGCCCCCACAACCACTTTTGTCAGATCCTCTGCCAGCAGCTAGAGAACGGCTTCCACCATCACTGTCGGAGCTTCCGCCAGCTGCTAGAGAGCAGCTTCCGCTGCCAACATCCCTTCCAGAGAATGTTGATCGACCTGTTCGTACAATCGATGATGTCTTTCGCAAAACCATAGCAACTCCTCAAATCTACTATTTACCTTTATCCGAAGAGCAAGTTGCAGCAAAACTGGCAGCACAGAGCAGAAGTGTTAAGCAGTAG 2220 0.4432 MSSTCPIGNDQPIDQLKVTELNDELKRTELATKGLKEDLINCLDEVLAIEKEKDDVSGFNGNASDTDEKGNTAKVHPVETGNEEMIPEVVNNDSGKSDITKLVGNDCSAMADQVVDHMDLSADADSANVAEDLVHSSTKETAVTVSESVLTEATVVSGQEDSCISEPQNGHDQDSVTKQVSEESKPQLECDIKPPCENLTPDSLLSENQVSEVNTSLGSQVQSDSVSSNCVSINQKNELNDTIIANNINLEQEIVRSEMVEEPSSKIDVPVYDELHSMDVEELDKKKASVEENSSNNKSPSPDKTNSSEDVGYPEKLNLDRSSGDDSMEEDLPESKQSDSKFNVDELGVKGESVERPIVKEECGPAVVGEGLSEKGGTDHNNNIPAVSLVKKQKIHDRISVRDNQPKKRQRMWNSETVKDSNPQMSTVRPATAPKGEPNAFKRNLSRSDSSAINDAPKERFVPPSQRHPTNSLRIDHFLRPFTLKAVHELLDKTGNFTSFWMDEIKTHCYVSYSTVEEATETRNAVYNLQWPPHGGRLLVAEYVDPQEVQMKLRPPPHVAVNIDSTVPPETPTSLPEPSSCQHREQPPVPVTFPPPPPLSQLPPAAREWLPPPPAREWLPPPPTREWLPPPPTREWLPPPPAREWLPPPPLLSGPPQPLLSDPLPAARERLPPSLSELPPAAREQLPLPTSLPENVDRPVRTIDDVFRKTIATPQIYYLPLSEEQVAAKLAAQSRSVKQ* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0923 739 Gene3D SAP domain 3 56 IPR036361 -
Tpr3g0923 739 MobiDBLite consensus disorder prediction 564 696 - -
Tpr3g0923 739 MobiDBLite consensus disorder prediction 260 292 - -
Tpr3g0923 739 MobiDBLite consensus disorder prediction 566 581 - -
Tpr3g0923 739 MobiDBLite consensus disorder prediction 314 357 - -
Tpr3g0923 739 MobiDBLite consensus disorder prediction 176 190 - -
Tpr3g0923 739 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 621 - -
Tpr3g0923 739 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 634 736 - -
Tpr3g0923 739 CDD RRM_ACINU 470 550 IPR034257 -
Tpr3g0923 739 MobiDBLite consensus disorder prediction 157 202 - -
Tpr3g0923 739 Pfam RNSP1-SAP18 binding (RSB) motif 694 737 IPR032552 -
Tpr3g0923 739 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 634 736 - -
Tpr3g0923 739 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 621 - -
Tpr3g0923 739 MobiDBLite consensus disorder prediction 157 175 - -
Tpr3g0923 739 MobiDBLite consensus disorder prediction 293 312 - -
Tpr3g0923 739 MobiDBLite consensus disorder prediction 588 662 - -
Tpr3g0923 739 Coils Coil 18 38 - -
Tpr3g0923 739 SMART sap_9 13 47 IPR003034 -
Tpr3g0923 739 MobiDBLite consensus disorder prediction 260 357 - -
Tpr3g0923 739 MobiDBLite consensus disorder prediction 402 469 - -
Tpr3g0923 739 ProSiteProfiles SAP motif profile. 13 47 IPR003034 -
Tpr3g0923 739 SUPERFAMILY RNA-binding domain, RBD 464 552 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0923 Tpr-Chr3 8551205 8556081 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0923 K12875 - gmx:100786288 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0923 3 8551205 8556081 Tpr3g0923 3 8551205 8556081 ECH
Tpr3g0923 3 8551205 8556081 Tpr2g4960 2 55363756 55367920 ECH