Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4960 ATGTCATCGAATTCAAAATACCCGATTTTGGACGATAAGCCCATTAACCAGTGGAAGGTTACAGCGTTGAAAGAGGAATTGAAGAGAAGGAAGTTAGCTACCAAAGGTTTGAAGGAAGATTTAATTAACCGTTTGGATGAAGCTCTTCGCAATGAAAGGGAGACTGCTGAGGCTTCCCCTGAACAGGAGGCTGCTGTGGGTTCGGAGAAGGATGGGGCTAATGGTTTAAACGCTCAAGTAGATGGGGTGAAAGATGCCCAGACTGATAATGTGGACGCTGAAGTCGTTGATACGATTGAAAAGGAGAATTTCCAAACATTTGAAACTTCTGAACAGGGGAATAGTGATGCAGTGAAGGTTTCAGAGGTTGTGGATAATGACAGTATTAAGAATGTTGAGCAGGATGGTGTTACCGAACCAGTTGACGTTAATAATAGTGTGTCGGCCATGGATGTTGAAGGTGAACATGCAGTTTTGCCTGTTGGTGGTGAATCTGCTAATGTGGGAGAGGAGGTAGTTGCCCATCCTTCTACTGTGGAGACCACTGTTACAGTCACCGAGACCGTGGTCACAGAGACTGTATCAACAGAAGCAGTAGTCAGTGGTCAGGATTCTTATAGTTCAGAGAAGAATAATGAGGATTCAGCAATCAAGCTAGAGAATGAGGAATCAAAGGCGCAGCTGGACATTGAGGACTCAAAGCCCCAATTGGAGTCTGACACAAAGCCCCCATCCGACGATCCCGTGCCCGACTCTTCTGCACCCGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTTTTTCTACTGATTCTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTGCTAATAATAATGTCAAATTAGAACAAGATAATGTTAGGCCGGAGATGGTGGAAGAACCATCGTCCAGAAATGTACCTGTTTATGATGAATTGCATTCAATGGATGTTGGAGGGCTGCATGAAAAAAAGCCATCTGTTGAAGAAAATAACAACAGTGTTACAAGTCCAGACTTGAACAAAACCAATAGTAGTGATGATGTAGGGTATCCAGAAAAGTTGAACTTGGACAGAAGTTCTGGTGATGATTCCATGGAAGAGGACTTGCCTGAGACTAGGCAATATGATTCTAAGTTTAATGTTGATGAACTTGTAGAGAAAGTTGAGAATAATGAAGTACCTATGGTCAAGGAGGAAAGGAATACAACAGATGTGGGAGATGGTGTATCCGCAAGAAAAAGCGATACCCACCAAGATATTGACATTAGTCCTGTTTCCCTTACTGAGAAGCGAAAATATCCTGAACAAACATTAGCTGCGAACATTGAGCCTGCAAAAAGGCAGCGCAGGTGGAACACTGAAACAGTTAAAGGGTCAGATCTGCAAAGCACTACTCCCAGATCTGCTACTACACCCAAGGATGGGCAAATTACTCTGAAGCGCAACTTCTCTAGGTCTAATTCCTCTGCAACTGATGACACCCCTAAAGAACGCATTGTTCCACCATCTCGAAGGACCCCAACTAATTCCCTCAGGATTGATCAATTCCTTCGTCCATTTACCCTAAAAGCAGTGCAAGAACTTCTTGGGAAAACTGGGAGTGTTAGCAGTTTCTGGATGGACCAAATAAAGACCCATTGCTATGTTACTTACTCATCCATCGAAGAGGCCACTGAGACACGGAATGCTGTGTATAATTTGCAATGGCCTCCAAATGGTGGGCGACTCTTAGTTGCTGAGTATGTTGATCCTGAAGAAGTGAAAATGAAGTTAGAAGCTCCTCCTACTCCAACTGCCCCTGTCATCAGTGCTCCAACAGTTCCTCCCGCACCACCTTCGCAGCCAGAGCCTTCCCCACGTCAGCAGAGGGAGCAGCTTCTTCCAGTTACTCTCCCACCTCCACCTCCATTGTCAAGGCCCCCACCAGTTGCAAGAGAACGTCTTCCATCTCCCCCACCCCTTCCTGAGAAAGCGGACCCACCTATTGTCACTCTGGACGACCTCTTCCGCAAAACCAAAGCAACTCCTCGGATCTATTATTTACCTTTGTCTGAAGAGCAAGTTGCTGCAAAACTTGCGGCACAAGGTAAAAATACGAGGCAGTAG 2142 0.4477 MSSNSKYPILDDKPINQWKVTALKEELKRRKLATKGLKEDLINRLDEALRNERETAEASPEQEAAVGSEKDGANGLNAQVDGVKDAQTDNVDAEVVDTIEKENFQTFETSEQGNSDAVKVSEVVDNDSIKNVEQDGVTEPVDVNNSVSAMDVEGEHAVLPVGGESANVGEEVVAHPSTVETTVTVTETVVTETVSTEAVVSGQDSYSSEKNNEDSAIKLENEESKAQLDIEDSKPQLESDTKPPSDDPVPDSSAPENQVSEVNPSLGSQVKSDSFSTDSVSINQKNELKDTIIANNNVKLEQDNVRPEMVEEPSSRNVPVYDELHSMDVGGLHEKKPSVEENNNSVTSPDLNKTNSSDDVGYPEKLNLDRSSGDDSMEEDLPETRQYDSKFNVDELVEKVENNEVPMVKEERNTTDVGDGVSARKSDTHQDIDISPVSLTEKRKYPEQTLAANIEPAKRQRRWNTETVKGSDLQSTTPRSATTPKDGQITLKRNFSRSNSSATDDTPKERIVPPSRRTPTNSLRIDQFLRPFTLKAVQELLGKTGSVSSFWMDQIKTHCYVTYSSIEEATETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLEAPPTPTAPVISAPTVPPAPPSQPEPSPRQQREQLLPVTLPPPPPLSRPPPVARERLPSPPPLPEKADPPIVTLDDLFRKTKATPRIYYLPLSEEQVAAKLAAQGKNTRQ* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4960 713 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 4 711 - -
Tpr2g4960 713 Pfam RNSP1-SAP18 binding (RSB) motif 667 710 IPR032552 -
Tpr2g4960 713 MobiDBLite consensus disorder prediction 458 518 - -
Tpr2g4960 713 MobiDBLite consensus disorder prediction 467 506 - -
Tpr2g4960 713 MobiDBLite consensus disorder prediction 220 282 - -
Tpr2g4960 713 MobiDBLite consensus disorder prediction 610 630 - -
Tpr2g4960 713 SUPERFAMILY RNA-binding domain, RBD 514 602 IPR035979 GO:0003676
Tpr2g4960 713 MobiDBLite consensus disorder prediction 220 245 - -
Tpr2g4960 713 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 4 711 - -
Tpr2g4960 713 Pfam SAP domain 15 49 IPR003034 -
Tpr2g4960 713 MobiDBLite consensus disorder prediction 341 361 - -
Tpr2g4960 713 MobiDBLite consensus disorder prediction 303 322 - -
Tpr2g4960 713 CDD RRM_ACINU 520 604 IPR034257 -
Tpr2g4960 713 MobiDBLite consensus disorder prediction 640 671 - -
Tpr2g4960 713 MobiDBLite consensus disorder prediction 363 387 - -
Tpr2g4960 713 MobiDBLite consensus disorder prediction 51 89 - -
Tpr2g4960 713 ProSiteProfiles SAP motif profile. 15 49 IPR003034 -
Tpr2g4960 713 SMART sap_9 15 49 IPR003034 -
Tpr2g4960 713 MobiDBLite consensus disorder prediction 251 282 - -
Tpr2g4960 713 MobiDBLite consensus disorder prediction 333 387 - -
Tpr2g4960 713 SUPERFAMILY SAP domain 15 52 IPR036361 -
Tpr2g4960 713 MobiDBLite consensus disorder prediction 605 675 - -
Tpr2g4960 713 Coils Coil 38 58 - -
Tpr2g4960 713 Gene3D SAP domain 2 65 IPR036361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4960 Tpr-Chr2 55363756 55367920 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4960 K12875 - gmx:100786288 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4960 2 55363756 55367920 Tpr2g4960 2 55363756 55367920 ECH
Tpr3g0923 3 8551205 8556081 Tpr2g4960 2 55363756 55367920 ECH