LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g0687	ATGGGAGAGGAAGAAAAGAAAACAGAGGAAACCAAAGTAGAGGAGAAAAAAACAGAGGAACCTAAAACAGAGGAACCGAAGAAAGAAGCTGACAAACCCACCGAAGAGAAAAAGCCGGAGGAATCTAAGGAACAAACTCCGCCACCACCGCCTCCAGAAATCGTGCTAAAAGTTTTCATGCATTGTGAAGGTTGTGCTCGCAAAGTTCGTCGTTCACTCAAAGGATTTCCAGGTGTTGAAGATATTGTTACAGATTGCAAATCTCACAAAGTTGTTGTTAAAGGAGAAAAAGCGGATCCATTGAAGGTTCTAGAAAGAGTACAGAGGAAGAGTCATAGACAAGTTGAACTTCTTTCTCCGATCCCAAAACCACCTTCAGAAGATGAGAAAAAACCTGAAGAGAAAGAAAAGCCTAAACCAGAAGAAGAGAAGAAAGAAGAGCCTAAGATTAGCATAGTGATTCTGAAAGTTCACATGCATTGTGAAGCTTGTTCACAAGAAATCAAGAGACGCATTGAGAAAATCAAAGGAGTGGAATCAGCAGAACCGGATCTGAAGAACTCACTAGTGACAGTGAAAGGAGTGTTTGAAACTGATAAATTAGTTGAATATGTTTACAAGAGAACTGGAAAACAAGCAGTGATAGTGAAACAAGAGGCAGAGAAAAAAGAGGAAGCAAAAGAAACCAAAGAAGAAGAGAAAAAAACTGATGAAAATGAAAAGGAAAAGAAAGGGAGTGGTGAAGGAGAGGAAAAGAAAGAAGCCGCTGCAGCTGCTGCAGAGGGAGATGGAAAATCAAGTGATGCTGCAGAAGAAACCAAGGTGGTGGAATTTAAGAGAAATGAATATCATTATTATAATCCACCAAGTATGGAATTTTATTATAATCCTAGTCAAGCTTACCCTCCACAGATGTTCAGTGATGAGAATCCAAATGCTTGTTCTGTTATGTAA	954	0.3941	MGEEEKKTEETKVEEKKTEEPKTEEPKKEADKPTEEKKPEESKEQTPPPPPPEIVLKVFMHCEGCARKVRRSLKGFPGVEDIVTDCKSHKVVVKGEKADPLKVLERVQRKSHRQVELLSPIPKPPSEDEKKPEEKEKPKPEEEKKEEPKISIVILKVHMHCEACSQEIKRRIEKIKGVESAEPDLKNSLVTVKGVFETDKLVEYVYKRTGKQAVIVKQEAEKKEEAKETKEEEKKTDENEKEKKGSGEGEEKKEAAAAAAEGDGKSSDAAEETKVVEFKRNEYHYYNPPSMEFYYNPSQAYPPQMFSDENPNACSVM*	318

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g0687	317	Gene3D	-	51	123	-	-
	Tpr3g0687	317	SUPERFAMILY	HMA, heavy metal-associated domain	55	110	IPR036163	GO:0046872
	Tpr3g0687	317	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7	1	317	IPR044577	GO:0046872
	Tpr3g0687	317	MobiDBLite	consensus disorder prediction	123	149	-	-
	Tpr3g0687	317	Gene3D	-	150	216	-	-
	Tpr3g0687	317	ProSiteProfiles	Heavy-metal-associated domain profile.	151	215	IPR006121	GO:0046872
	Tpr3g0687	317	SUPERFAMILY	HMA, heavy metal-associated domain	152	215	IPR036163	GO:0046872
	Tpr3g0687	317	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7	1	317	-	-
	Tpr3g0687	317	Pfam	Heavy-metal-associated domain	156	205	IPR006121	GO:0046872
	Tpr3g0687	317	Pfam	Heavy-metal-associated domain	56	109	IPR006121	GO:0046872
	Tpr3g0687	317	ProSiteProfiles	Heavy-metal-associated domain profile.	60	116	IPR006121	GO:0046872
	Tpr3g0687	317	Coils	Coil	213	243	-	-
	Tpr3g0687	317	MobiDBLite	consensus disorder prediction	219	274	-	-
	Tpr3g0687	317	MobiDBLite	consensus disorder prediction	1	54	-	-
	Tpr3g0687	317	MobiDBLite	consensus disorder prediction	1	44	-	-
	Tpr3g0687	317	MobiDBLite	consensus disorder prediction	110	149	-	-
	Tpr3g0687	317	CDD	HMA	155	213	IPR006121	GO:0046872
	Tpr3g0687	317	CDD	HMA	60	116	IPR006121	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g0687	Tpr-Chr3	6616054	6617957	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g0687	-		-	lang:109362245	303.523

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr3g0687	3	6616054	6617957	Tpr3g0687	3	6616054	6617957	ECH
	Tpr3g0687	3	6616054	6617957	Tpr3g3315	3	36552439	36554418	PCT