Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0678 ATGACTCCTCTCATAAAAACCTTTCTATTTTCTTTTTTTCTCATCACTCTCTCCTTCCCCTATACACAGGCAGCACAATTCGACATCAAAAATAATTGTAGGGACACCGTATGGGCTGCCGCTGTGCCAGGTGGCGGTAGGCAACTAAACTCGGGAGAAATGTGGACCATCAACGTAGCTGCAGGTACCAAAGCGGCCCGTATTTGGGCCCGAACTGGTTGCAGCTTCGACAGTTCAGGCAACGGTCATTGTGAAACCGGTGACTGCGGCGGATTACTAAATTGCCAAGCTTACGGTACACCCCCTAACACACTAGCGGAATACGCTTTAAACCAATACATGAATTTAGACTTTTTTGACATTTCTCTTGTAAATGGATTCAACGTTCCTATGGATTTTAGTCCAACGTCTAATGGTTGTACACGTGGCATTCAATGTACCGCTGATGTTAACGGACAGTGTCCTAGTGAACTTAAAACACAAGGGGGTTGTAACAACCCATGTACGGTTTTTAAAACCGATAATTACTGTTGTAATTCTGGTAATTGTGGACCCACTGATTATTCAAAATATTTTAAGGGTAAGTGTCCTGATGCTTATAGTTACCCAAAGGATGATGCCACAAGTACATTCACTTGCAATGGTGGAACCAATTACAAGGTTGTCTTTTGCCCATGA 678 0.4322 MTPLIKTFLFSFFLITLSFPYTQAAQFDIKNNCRDTVWAAAVPGGGRQLNSGEMWTINVAAGTKAARIWARTGCSFDSSGNGHCETGDCGGLLNCQAYGTPPNTLAEYALNQYMNLDFFDISLVNGFNVPMDFSPTSNGCTRGIQCTADVNGQCPSELKTQGGCNNPCTVFKTDNYCCNSGNCGPTDYSKYFKGKCPDAYSYPKDDATSTFTCNGGTNYKVVFCP* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0678 225 PANTHER OS03G0233200 PROTEIN 7 225 IPR001938 -
Tpr3g0678 225 ProSiteProfiles Thaumatin family profile. 24 225 IPR001938 -
Tpr3g0678 225 SUPERFAMILY Osmotin, thaumatin-like protein 25 225 IPR037176 -
Tpr3g0678 225 CDD TLP-P 27 225 - -
Tpr3g0678 225 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Tpr3g0678 225 PRINTS Pathogenesis-related protein signature 45 54 IPR001938 -
Tpr3g0678 225 PRINTS Pathogenesis-related protein signature 67 78 IPR001938 -
Tpr3g0678 225 PRINTS Pathogenesis-related protein signature 80 109 IPR001938 -
Tpr3g0678 225 PRINTS Pathogenesis-related protein signature 117 133 IPR001938 -
Tpr3g0678 225 PRINTS Pathogenesis-related protein signature 215 224 IPR001938 -
Tpr3g0678 225 PANTHER THAUMATIN-RELATED 7 225 - -
Tpr3g0678 225 PIRSF PR5 1 225 IPR001938 -
Tpr3g0678 225 Pfam Thaumatin family 31 225 IPR001938 -
Tpr3g0678 225 Gene3D Thaumatin 25 225 IPR037176 -
Tpr3g0678 225 SMART tha2 27 225 IPR001938 -
Tpr3g0678 225 ProSitePatterns Thaumatin family signature. 80 95 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0678 Tpr-Chr3 6548306 6549190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0678 4 225 Receptor kinase-like Gene Family AT5G38280 35.458 2.65e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0678 - - oeu:111380489 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0678 3 6548306 6549190 Tpr3g0678 3 6548306 6549190 ECH
Tpr2g3859 2 41388967 41390193 Tpr3g0678 3 6548306 6549190 PCT